PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G03320.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 289aa    MW: 32525.2 Da    PI: 8.1203
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G03320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B390.31.5e-2837127187
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k ltpsdv+k++rlv+pk++ae++    g    ++  l++ede g  W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ 
  OPUNC11G03320.1  37 FEKPLTPSDVGKLNRLVIPKQHAERYfplgGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDIVHFERVRG 127
                      99***************************8666668889************************************************7642 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-4031146IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-2834128IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-2736129No hitNo description
PfamPF023628.8E-2637127IPR003340B3 DNA binding domain
PROSITE profilePS5086312.81637142IPR003340B3 DNA binding domain
SMARTSM010191.8E-2137142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAMNPLFSQE QPQSWPWGVA MYANFHYHHH YEKEHMFEKP LTPSDVGKLN RLVIPKQHAE  60
RYFPLGGDAA DKGLILSFED EAGAPWRFRY SYWTSSQSYV LTKGWSRYVK EKRLDAGDIV  120
HFERVRGSFG VGDRLFIGCR RRGDTAQTPA PPPAVRVAPA AQNAGEQQPW SPMCYSTSGS  180
YPTSPANSYA YRRAADHDHG DMHHADESPR DTDSPSFSAG SAPSRRLRLF GVNLDCGPEP  240
EADTTAAATM YGYMHQHSSY AAMSAVPSYW LVLTSNTTKL RQLLSYKHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-51321423113B3 domain-containing transcription factor NGA1
5os9_B1e-51321423113B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704870.0AK070487.1 Oryza sativa Japonica Group cDNA clone:J023049E11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662746.11e-177PREDICTED: B3 domain-containing protein Os11g0156000
SwissprotQ53QI01e-177Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A0E0MCM50.0A0A0E0MCM5_ORYPU; Uncharacterized protein
STRINGOPUNC11G03320.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.21e-53B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]