PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC11G03220.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 287aa    MW: 30814.3 Da    PI: 6.6773
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC11G03220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.43.1e-41141452128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +pGfrF Pt+eel+ +yL+++++g++ ++e+vi+ +d+y ++P++L +    + + ++++w+fF++r++++ +g r+ r+t sgyWkatg+   
  OPUNC11G03220.1  14 TPGFRFYPTEEELLGFYLRHRLAGTRPDVERVIPVIDVYGYHPSQLAAvageASARDTEQWFFFCPRAERELHGGRPARTTPSGYWKATGSPSC 107
                      69***************************99***************84455333335569*******************************999 PP

              NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      v+s+ +++++g+k+t+vfy+grap+g+kt+W m+ey++
  OPUNC11G03220.1 108 VISSaTNRVIGVKRTMVFYQGRAPTGTKTRWKMNEYKA 145
                      998868889***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-4511177IPR003441NAC domain
PROSITE profilePS5100546.11713178IPR003441NAC domain
PfamPF023658.9E-2315144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MATTRSSGSD PFATPGFRFY PTEEELLGFY LRHRLAGTRP DVERVIPVID VYGYHPSQLA  60
AVAGEASARD TEQWFFFCPR AERELHGGRP ARTTPSGYWK ATGSPSCVIS SATNRVIGVK  120
RTMVFYQGRA PTGTKTRWKM NEYKAVADDD ADAGAAMLHP IAPPRLRNEL GVCRVYISTG  180
TLRSFDRRPL DNQAAHTQQQ LPSLTAAVAA VNTNLAAAGV VFAGAQGDSS RDGSSSSGSR  240
ELTGGGYGSE EDAIDWNSLI SSATVDDLGF STVVGFDPSI VGSWPQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-291517619163NO APICAL MERISTEM PROTEIN
1ut4_B5e-291517619163NO APICAL MERISTEM PROTEIN
1ut7_A5e-291517619163NO APICAL MERISTEM PROTEIN
1ut7_B5e-291517619163NO APICAL MERISTEM PROTEIN
3swm_A5e-291517622166NAC domain-containing protein 19
3swm_B5e-291517622166NAC domain-containing protein 19
3swm_C5e-291517622166NAC domain-containing protein 19
3swm_D5e-291517622166NAC domain-containing protein 19
3swp_A5e-291517622166NAC domain-containing protein 19
3swp_B5e-291517622166NAC domain-containing protein 19
3swp_C5e-291517622166NAC domain-containing protein 19
3swp_D5e-291517622166NAC domain-containing protein 19
4dul_A5e-291517619163NAC domain-containing protein 19
4dul_B5e-291517619163NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1099390.0AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615861.11e-163NAC domain-containing protein 90
TrEMBLA0A0E0MCL40.0A0A0E0MCL4_ORYPU; Uncharacterized protein
STRINGOPUNC11G03220.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.26e-65NAC domain containing protein 61