PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC11G02200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 208aa MW: 23161.4 Da PI: 8.8558 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 62.2 | 1.7e-19 | 12 | 128 | 12 | 128 |
NAM 12 eelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 ++l+++yL + + gk+ ++e++i+ vd+y++ePwdL k + e+ +fF++ ++++ ++++k+r++ +g+W + + kev++k g OPUNC11G02200.1 12 QDLITFYLPRLIVGKPpKDTEKFIRCVDVYRSEPWDLAgKfapvpR--CEKGGRFFFTSCKRHKGSSTKKERTAGAGTWVRQNS-KEVKNKAGV 102 79*************94455566**************843454222..255588**************************8865.999999*** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg + + f ++g+ tdW+m+e + OPUNC11G02200.1 103 KVGETQNFRFK----KDGRYTDWLMEEHHC 128 **********7....78899*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.263 | 1 | 148 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-9 | 12 | 127 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-20 | 12 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MYPSGCHVLV HQDLITFYLP RLIVGKPPKD TEKFIRCVDV YRSEPWDLAG KFAPVPRCEK 60 GGRFFFTSCK RHKGSSTKKE RTAGAGTWVR QNSKEVKNKA GVKVGETQNF RFKKDGRYTD 120 WLMEEHHCCR QQAVAGDEEP VICRMYVSPR APPDSAARQE SAAFVQPPRD PATGDREEAR 180 AAVRGEDGRC CLGMSGGAPE LCGGVHAM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | BX000502 | 0.0 | BX000502.2 Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | BX000504 | 0.0 | BX000504.2 Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619129.1 | 1e-102 | NAC domain-containing protein 41 | ||||
TrEMBL | A0A0E0MC84 | 1e-153 | A0A0E0MC84_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC11G02200.1 | 1e-154 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1832 | 27 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 4e-10 | NAC domain containing protein 50 |