PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G17380.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family STAT
Protein Properties Length: 687aa    MW: 75919.5 Da    PI: 5.1842
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G17380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT187.21.9e-582343541121
             STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 
                      l+v+l++a+g+++ kd e+vasL+yad+g++veks dd+e+pLLis+dG+e+++++rpl+++rGra+fklkisqLsskcdn+Lfri f+++ +k
  OPUNC10G17380.1 234 LEVLLVDAFGEAA-KDREIVASLVYADNGALVEKSrDDSEPPLLISCDGIEYPAVSRPLPIIRGRALFKLKISQLSSKCDNKLFRIFFSTLGMK 326
                      79**********7.*********************9********************************************************** PP

             STAT  94 kypfleavskpirCisrsrntrsssltk 121
                      +ypflea+skpirCisr+r++r+++++k
  OPUNC10G17380.1 327 RYPFLEAYSKPIRCISRNRTSRPLGSAK 354
                      **********************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498991.07E-640173IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF555503.55E-5604673IPR000980SH2 domain
PROSITE profilePS500019.277611687IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MAAAPGCGGG DGYCDLRDVR IECDLGKVRG GGEGGEGGGG GGFTVCFWLY LSSSARPSSV  60
ILHQVAEGGG DKVPFLALGE GNKLLLFPLL GFHREAPTPD SSYPWTDITN LTEVNECPLD  120
NWFHVGCEVT ENIMCLHIDG DLVAETHLHS LYNEPDYQDD ANQINLLGSM DNLEGYVYNM  180
ELSCMLGTIQ QQFAKNPPFK LSIDYSCSDG IEEGDDGIWN IVGGKASCRR NFILEVLLVD  240
AFGEAAKDRE IVASLVYADN GALVEKSRDD SEPPLLISCD GIEYPAVSRP LPIIRGRALF  300
KLKISQLSSK CDNKLFRIFF STLGMKRYPF LEAYSKPIRC ISRNRTSRPL GSAKRIGSAS  360
MDEIQSINNC EGFGHNGKAN GRLQTHDPSS VVCFHPSKFS KIEDDVQKTA SQNKHAKKMV  420
LDKGAQDVMG SDSTASDYDS MDAGSSWSLS DGDEVESFSD AEIFRYCLDG THERSKFLRA  480
AAPSVNEDDL VKLANQVSLY SGCTHHRNQI LMSKQLLQEG ADIWSIISKN NERALWSSAV  540
PEIKAKFLEI VHPSNRGLSE QDFEVLRGIA CCGDDIGRDE FDKLWSWLYP VAVALSKDKI  600
NRLWDFTAHR WIEGLITLQE TENALRSSRE RLKKPGTFVL RFPTTRSWPH PDAGSLVVTY  660
VGSDNSIHHR LLSLDVRVDR LPSSMQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708290.0AK070829.1 Oryza sativa Japonica Group cDNA clone:J023065P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614084.10.0SH2 domain-containing protein A isoform X1
TrEMBLA0A0E0MAX40.0A0A0E0MAX4_ORYPU; Uncharacterized protein
STRINGOPUNC10G17380.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75473135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.11e-143SH2 domain protein B