PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G17200.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 340aa    MW: 36003.5 Da    PI: 8.8435
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G17200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.19.7e-2356145186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +Wt++e+laLiea+r+++e lr+g+l++ +W++v+ ++        +  ++s +qC++k+e+l+kry+++++++ +r+++   ++p+f  l+
  OPUNC10G17200.1  56 CWTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVtarcgrFPTATHKSGVQCRHKIEKLRKRYRAERARAAGRSKG--PKWPFFPLLH 145
                      8*************************************99998888899**************************98443..47****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-2155146No hitNo description
PROSITE profilePS500905.99357119IPR017877Myb-like domain
SMARTSM005951.1E-564148IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSSSSSPPPN PDALSSPDLP PLAAPVAAAA AAAAAAASSG GGGGAGGSGR RLPPPCWTHE  60
ETLALIEAYR DRWEGLRKGN LRASDWDDVA GAVTARCGRF PTATHKSGVQ CRHKIEKLRK  120
RYRAERARAA GRSKGPKWPF FPLLHDLAGG GAPDPSPNPI IKIKSKGPAA AAASPSPASP  180
SPVSSPSSEE EEDEEEAAAA DAGRSRSLHG LISNGGSGSG LRFTIPKASR SKPVAQREQP  240
TAIKVEKSEE DAEVEAIAEV ASALRAVGDK FLRMEERRLE ISLQIEKERM ELEMKRTQTL  300
LDAQQLFVEA FLGKQQQHLH HHKKAKMISS SAAASAMEED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0847630.0AC084763.4 Oryza sativa chromosome 10 BAC OSJNBa0027P10 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574347.11e-150trihelix transcription factor ASIL2
TrEMBLA0A0E0MAU50.0A0A0E0MAU5_ORYPU; Uncharacterized protein
STRINGOPUNC10G17200.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-17Trihelix family protein