PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC10G16940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | B3 | ||||||||
Protein Properties | Length: 294aa MW: 32057.3 Da PI: 10.2098 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 96.7 | 1.6e-30 | 37 | 142 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 f+kv tpsdv+k++rlv+pk++ae++ gg ++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F + OPUNC10G16940.1 37 FEKVVTPSDVGKLNRLVIPKQHAERYfpldaaaaGG---KGLVLSFEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDTVSFGRGl 127 99*************************999876432...5678************************************************666 PP SS.SEE..EEEEE-S CS B3 86 gr.sefelvvkvfrk 99 g+ +++l++ ++r+ OPUNC10G16940.1 128 GDaARGRLFIDFRRR 142 888999999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-39 | 31 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.27E-30 | 34 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.67E-28 | 35 | 123 | No hit | No description |
Pfam | PF02362 | 6.4E-28 | 37 | 142 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-21 | 37 | 143 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.353 | 37 | 143 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MEFTPIAPPT RVAGGEEDSE RGAAVAAWAV VEKEHMFEKV VTPSDVGKLN RLVIPKQHAE 60 RYFPLDAAAA GGKGLVLSFE DRTGKAWRFR YSYWNSSQSY VMTKGWSRFV KEKRLGAGDT 120 VSFGRGLGDA ARGRLFIDFR RRRQDAGTFM FPPTAAPSHS HHHHHHHQRQ LPLPSVPLCP 180 WRDYTAYGGY GYGGSTPASS RHVLFLRPQV PAAVVLKSVP VHVTASAVQE ATTTRPKRVR 240 LFGVNLDCPA MDDDDIAGAA SRTAASSLLQ LPSPSSSTSS STAGKRMCSL DLGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-56 | 30 | 142 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-56 | 30 | 142 | 1 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC074196 | 0.0 | AC074196.14 Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613852.1 | 1e-149 | putative B3 domain-containing protein Os10g0537100 | ||||
Swissprot | Q8LNN8 | 1e-150 | Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100 | ||||
TrEMBL | A0A0E0MAR9 | 0.0 | A0A0E0MAR9_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC10G16940.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP583 | 37 | 168 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61970.1 | 5e-52 | B3 family protein |
Publications ? help Back to Top | |||
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