PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G16180.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 661aa    MW: 68145.5 Da    PI: 6.4149
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G16180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.83e-953026602374
             GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                      ve+L e+A+  ++gd+  a+++Larl+ +   a  +g+p+ R a+yf+eAL+  l+     + +a +ps+++ ++++ +l a+k+fsevsP+l+
  OPUNC10G16180.1 302 VEQLAEAAKLAEAGDAFGAREILARLNYRlpaAPTAGTPLLRSAFYFKEALRLALSP----TGDAPAPSASTAYDVVVKLGAYKAFSEVSPVLQ 391
                      789*************************999555566******************99....899999*************************** PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      f+hlt+ qa+l++++g+ ++H++Dfdi++G QW++L+q+La+R +++  l++T+++sp+s++  el+ ++e+L++fA+elgv f+f+v+   ++
  OPUNC10G16180.1 392 FAHLTCVQAVLDELSGAGCIHVLDFDIGMGEQWASLMQELAQR-RPATALKVTALVSPASHHPLELQLIHENLSSFAAELGVFFHFTVF---NI 481
                      ******************************************9.7889****************************************9...77 PP

             GRAS 187 edleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      ++l++ eL ++ +g+a+aV+l +   ++     +     ++vL+lvk+l +kvvv v++ +d+++ sF+++++++++  ++l++s++a  +++ 
  OPUNC10G16180.1 482 DTLDPAELlAIASGDAVAVHLPVGSAHVA----T----MPAVLRLVKRLGAKVVVSVDRGCDRSDLSFAAHLFHSFHSTVYLLESIDAV-GTDP 566
                      7887766538899***********99998....4....456*********************************************998.7888 PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      ++++k+Er l++++i+++v  ++++    + +++ Wr+++ +aGF pv+ +++a++qa++ll+kv+++g+rve++ gsl+l+W++ +LvsvSaW
  OPUNC10G16180.1 567 DTAAKIERYLIQPAIEQCVVGRHRA-ASAMDKAQPWRAAFAAAGFVPVQATTFAESQAESLLNKVHVRGFRVEKRAGSLCLYWQRGELVSVSAW 659
                      **********************999.899999************************************************************** PP

             GRAS 374 r 374
                      r
  OPUNC10G16180.1 660 R 660
                      8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.355275640IPR005202Transcription factor GRAS
PfamPF035141.0E-92302660IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MPFGGSAREG HAGTLLLQHQ LIRGVGLAAA GKVVSSSAAA AAAAAAGAGG FWEPRSVLDH  60
RHSPSPSPPT SASTLSSPLA DVAALAGANA KNVSVSVSPP AAGWGTGGGG GGGAGGEEVV  120
VAKEEWVHQL TPLDMGLGAG EGWDAAGLSD AAAPSGMAPD NTFLRWIIGG EDASAAMAGV  180
MDPPVLELDH GGPAPMPAAA FGPNLSSFAP PAMEDTKPVA VPLGGHPPNF LLHHHPQPHA  240
AFFGAHPSFD SAPPPSKRHH PMAGAPAPKL PPFPGPLGPA GGFVPALKPK AEAANDEAAA  300
AVEQLAEAAK LAEAGDAFGA REILARLNYR LPAAPTAGTP LLRSAFYFKE ALRLALSPTG  360
DAPAPSASTA YDVVVKLGAY KAFSEVSPVL QFAHLTCVQA VLDELSGAGC IHVLDFDIGM  420
GEQWASLMQE LAQRRPATAL KVTALVSPAS HHPLELQLIH ENLSSFAAEL GVFFHFTVFN  480
IDTLDPAELL AIASGDAVAV HLPVGSAHVA TMPAVLRLVK RLGAKVVVSV DRGCDRSDLS  540
FAAHLFHSFH STVYLLESID AVGTDPDTAA KIERYLIQPA IEQCVVGRHR AASAMDKAQP  600
WRAAFAAAGF VPVQATTFAE SQAESLLNKV HVRGFRVEKR AGSLCLYWQR GELVSVSAWR  660
C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2733366032375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184487.10.0scarecrow-like protein 6
TrEMBLA0A0E0MAG60.0A0A0E0MAG6_ORYPU; Uncharacterized protein
STRINGOPUNC10G16180.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-90GRAS family protein