PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G15730.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 382aa    MW: 40511.7 Da    PI: 4.5571
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G15730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.7e-10202244754
                      HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++P  +      K++  +iL  ++ Y+k+L
  OPUNC10G15730.1 202 MAERRRRKRLNDRLSMLRSVVPRiS------KMDRTSILGDTIGYVKEL 244
                      79*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.665195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14199255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00222202244No hitNo description
Gene3DG3DSA:4.10.280.101.5E-14202256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-7202244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MELMDDDGSS SFLEELMAPL RRGTPTTTTP EDLWLQAYPM CSDGGVMLGD LLVGGGDARN  60
TVASPPSFPL LVPVTTTPCP PLHEEIGFEF DCLGEVCNPY RRSGGAVRAA DAAQVMVAAM  120
DRPTSEAASS AVAALEEERC KARRGAGGGG DSGELRPMFV FGSVGGGGAA GSEMTTSGGA  180
AASVRPRSCR PPQPGAPSKN LMAERRRRKR LNDRLSMLRS VVPRISKMDR TSILGDTIGY  240
VKELMDRIKN LQDEAAAAGD SSSSSTELST LNTLKPQSSS SSSGDETTLI RNSTRFEVER  300
RENGSIGIEM ACAAIPELLP STLTALEALG LEIEQCVVSC FDDFAMQASC LQDDKKREMT  360
SDTEEIKQTL FRSAGYGAGC LI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203210ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636690.0AK063669.1 Oryza sativa Japonica Group cDNA clone:001-119-D04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613752.21e-160transcription factor TDR-like
TrEMBLA0A0E0MAB40.0A0A0E0MAB4_ORYPU; Uncharacterized protein
STRINGOPUNC10G15730.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1831799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.12e-53beta HLH protein 93