PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G15350.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 358aa    MW: 39059.2 Da    PI: 10.3989
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G15350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.63.1e-1537102159
                      EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgry 59 
                      f+kv tpsdv+k++rlv+pk++ae++         gg   ++  l++ed++g+ W+++++y+++s++y
  OPUNC10G15350.1  37 FEKVVTPSDVGKLNRLVIPKQHAERYfpldaaaagGGG--KGLVLSFEDRTGKAWRFRYSYWNSSQSY 102
                      99***************************999986433..5679**********************98 PP
2B393.21.9e-29103206399
                      EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                      kv tpsdv+k++rlv+pk++ae++        + ++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F +  g+  +
  OPUNC10G15350.1 103 KVVTPSDVGKLNRLVIPKQHAERYasaaaAAATGKGLVLSFEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDTVSFGRGlGDaAR 196
                      889*********************99998555668889************************************************66688899 PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                      ++l++ ++r+
  OPUNC10G15350.1 197 GRLFIDFRRR 206
                      9999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-2331102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-1634102IPR015300DNA-binding pseudobarrel domain
PfamPF023628.1E-1337102IPR003340B3 DNA binding domain
PROSITE profilePS5086313.817101207IPR003340B3 DNA binding domain
SMARTSM010194.9E-16102207IPR003340B3 DNA binding domain
SuperFamilySSF1019363.4E-26102190IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-33103209IPR015300DNA-binding pseudobarrel domain
CDDcd100177.11E-24103187No hitNo description
PfamPF023626.8E-27103206IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEFTPIAPPT RVAGGEEDSE RGAAVAAWAV VEKEHMFEKV VTPSDVGKLN RLVIPKQHAE  60
RYFPLDAAAA GGGGKGLVLS FEDRTGKAWR FRYSYWNSSQ SYKVVTPSDV GKLNRLVIPK  120
QHAERYASAA AAAATGKGLV LSFEDRTGKA WRFRYSYWNS SQSYVMTKGW SRFVKEKRLG  180
AGDTVSFGRG LGDAARGRLF IDFRRRRQDA GTFMFPPTAA PSHSHHHHHH HQRQLPLPSV  240
PLCPWRDYTA YGGYGYGGST PASSRHVLFL RPQVPAAVVL KSVPVHVTAS AVQEATTTRP  300
KRVRLFGVNL DCPAMDDDDI AGAASRTAAS SLLQLPSPSS STSSSTAGKR MCSLDLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-47302061113B3 domain-containing transcription factor NGA1
5os9_B8e-47302061113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0741960.0AC074196.14 Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613852.11e-127putative B3 domain-containing protein Os10g0537100
SwissprotQ8LNN81e-128Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBLA0A0E0MA590.0A0A0E0MA59_ORYPU; Uncharacterized protein
STRINGOPUNC10G15350.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.12e-41B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]