PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G15240.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 622aa    MW: 66949 Da    PI: 7.4356
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G15240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.25.9e-083934242354
                      SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      ryps  ++  LA+++gL+ +qV +WF N R +
  OPUNC10G15240.1 393 RYPSDVDKHILARQTGLSRSQVANWFINARVR 424
                      8*****************************88 PP
2BELL93.61.8e-30211281272
             BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       +elq+ k kL ++leeVd+rY++y+eq++++++sFeavag  +a+ Yt+lA+++iSrhFr+L+d ++ q+
  OPUNC10G15240.1 211 AAELQRLKGKLYTMLEEVDRRYRRYCEQMRALAASFEAVAGERAAAAYTRLASRTISRHFRSLRDGVVAQL 281
                      5799****************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.0E-44144279IPR006563POX domain
PfamPF075266.7E-43150277IPR006563POX domain
Gene3DG3DSA:1.10.10.601.8E-21332351IPR009057Homeodomain-like
SMARTSM003899.3E-4363432IPR001356Homeobox domain
SuperFamilySSF466896.42E-12390435IPR009057Homeodomain-like
CDDcd000861.23E-8391429No hitNo description
Gene3DG3DSA:1.10.10.601.8E-21391434IPR009057Homeodomain-like
PROSITE profilePS5007110.625393428IPR001356Homeobox domain
PfamPF059201.2E-11394424IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MAHDPSLGYA DYFAAEVDGA GATELYGLQQ QQQGVGVAEM FGVRGLMPAT AAHAHAQSKG  60
VGALGGGGVD DGGATLPTVH FGGLGELHHH HQHRQSQAPL SLSLHRPEAA AAATSLLMQQ  120
QHNHHHLHHQ PSPPAADAAS WQLQQGGWHL RGSRFLLPTQ QLLQEFCSLP AKSTSPSSAS  180
KAPKPAQEDG GGGGGGSSSW TAPTQIQSMD AAELQRLKGK LYTMLEEVDR RYRRYCEQMR  240
ALAASFEAVA GERAAAAYTR LASRTISRHF RSLRDGVVAQ LQAVRKQLGE KDTAVPGMTK  300
GETPRLRVLD QCLRQHKAYQ AGMLESHPWR PQRGLPERAV SILRAWLFEH FLHPRMFCGF  360
VTMRSHRSII GILILNFYGS LCCILFFCIV RFRYPSDVDK HILARQTGLS RSQVANWFIN  420
ARVRLWKPMV EEMYAEEMKD EEGSGQSQAS NPQNPNPSSY TSEGRGGEDR GEQKPSRAQL  480
LHDAGSLASV VSIGHGAGRM VDHHHQSLNF GMMDQLDFDA YEAAGGQGFG GAGGGVSLTL  540
GLQQQHADSH DGVNVAFAAA TPPSSGVAAE YLFMGGGGGG EHQQQLPQAA QFGAVMDGDA  600
ASHYRGLSAT AAGFHLLHDL AG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680290.0AK068029.1 Oryza sativa Japonica Group cDNA clone:J013134A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614125.10.0BEL1-like homeodomain protein 4
TrEMBLA0A0E0MA480.0A0A0E0MA48_ORYPU; Uncharacterized protein
STRINGOPUNC10G15240.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.16e-67TALE family protein