PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G14000.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1790aa    MW: 196420 Da    PI: 7.6775
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G14000.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-0617701789525
                       --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH    5 lCrffartGtCkyGdrCkFaH 25  
                       +Cr ++++G+C+ G +C+F H
  OPUNC10G14000.2 1770 ICR-YYENGYCRKGTSCQFLH 1789
                       799.6666************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.7E-8135196IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579034.87E-8135195IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.52140206IPR019787Zinc finger, PHD-finger
CDDcd155681.20E-19142187No hitNo description
SMARTSM002491.9E-6142188IPR001965Zinc finger, PHD-type
PROSITE patternPS013590143203IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475924.14E-20358438IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.1E-24359440IPR003121SWIB/MDM2 domain
PfamPF022013.4E-15363436IPR003121SWIB/MDM2 domain
SMARTSM007198.9E-36494590IPR004343Plus-3 domain
SuperFamilySSF1590421.7E-22494608IPR004343Plus-3 domain
PROSITE profilePS5136014.531494613IPR004343Plus-3 domain
PfamPF031265.9E-12499579IPR004343Plus-3 domain
SuperFamilySSF552773.79E-14784842IPR003169GYF domain
PROSITE profilePS5082914.231787839IPR003169GYF domain
SMARTSM004448.6E-12788841IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.7E-14789842IPR003169GYF domain
PfamPF022132.5E-9790831IPR003169GYF domain
PROSITE profilePS5010313.73217651790IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.67E-517681789IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-517701789IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1790 aa     Download sequence    Send to blast
MDGGTGQGAE LLSPGEAEWP PELRLPPPPP PMPPPPPLEP APPSTPQLPS PPPPTLPGGP  60
GAVATRKEAS SSPTRHAEGF DDSHFLGSIM GAPAHQHQQP PAVGPPVVVK RKRGRPPKNR  120
DGAAPPPAPP KPVKEEDDED MVCFICFDGG NLVVCDKKGC TKVYHPACIK RDESFFRSRA  180
KWTCGWHLCS TCEKAVQYMC YTCTYSLCKG CIKQKPVKFF GVRGNKGFCD TCYSTILLIE  240
SKDDRAKAKV DFDDKNNWEY LFKLYWLDLK GKHSLTLEEL VNAKSCWTVR STSARREKEE  300
SSNDLYDAND DHDASSDGAS RKRRRNSFSG KRGRKRQNSG TESLPKRVQN EGMTFIGDTQ  360
WASSELLEFI GHMRNGDISY ISQFDVQILL LEYVKQKNLR DPRRKSQIIC DARLTNLFRK  420
PRVGHFEMLK LLEMHFHAKE VVNGDGQKDI DSDSAQIDSG GYSDMPSKLC SDKRRKIHKK  480
IERESPANLE DYAAIDMHNI NLIYLRRSLL EDLIDDNGTF SDKIAGAFVR IRTPCVGQKQ  540
DIYRLVKVLG THKVAERYSV GKKTTDHALE ILNLDKKEEE CKRLRLSMKC GLVTRLKVGD  600
IHEKAKTFQL LRVNDWLENE KQRLSHLRDR ASETGRRKQY PFNLICTLMV IIDKFIKRSI  660
YTIIAKLLFA WGYMLFMHIL LTKLEFRLQL LGTPEERARM INEDPEVHVD PCMSPNYESA  720
EELDVKKAVD LTSRNEIDLL FLGRKGIETN SLQNHRQNCF ATSRHTTISP PTEGVTHGQG  780
EGDMEPEKVW HYKDPSGSVQ GPFTLLQLSK WATYFPRDLR IWLTFESEQN SLLLTEVLSK  840
QQKDFIQPSS EVENNKSTWE GVGQDRVDSN LTGNNSSSPI GYNVIYSSQL PSPSADYRAS  900
AREGPNPPSG TLPFMTSWKT QKDPQMLHGQ AQHQGDYSCT IPSSVVSYRP AGSHDEWPPR  960
GNIGEWNNSQ DSGGMWSPTT PHMNQSNLDH QPDRCIMKKQ LQNDSKSNSL SGSAENLNSQ  1020
MDFGSQKVHI PTPQQSERDL ATSVGTSRQS EFKTCHQEGS RWSSTADPIT HDGLQLSIAS  1080
AKPESCSAVN PIRDGDSSSA SCVPNQSGAH VYSPPHPATT NLSKSEETMN QRKSCEPEAS  1140
NESCKPDASH APVNQHPKPE SDPTLPDTQD FECTHPSPTT EHDTKEPLKD QSRSTSVAPE  1200
GSATKAQGQS SIAFISETSG PPSSKIVGLQ SPKDTSFLVE GDIKDKGSVT QTEQQKEEST  1260
TFKRENIAVD PISDSEAIVS GVLESLTETY NLHEETPLEN FTPTSAEEEQ PQCSTPIALS  1320
PWDETSDYQG EAVDSALWGG VQDDQNNEMW SLSSPTPTLQ PSGLGATKGA SCAIEEVIVA  1380
QGNSGVVEPS PALEKKRIEK VPSASIDRGV PEQVKPKPNA ALSPEESRKP SGLQLSRTSV  1440
QGSTKSSGLP PSGTSLEGGT EPTGLLPSGT SLEWGTKNSG VQSLASSLEG SKKAFVRQPS  1500
CSSLEGNTKA SGRQPSGSSI EGSKKPSDRQ PSGASQEGNT KPSGWQQPVS SLEGGTKPSG  1560
WKPSISIDTN TKASGWLRSS SSPDVSRKAS AWQSSGSSPV AGSTKASGWQ RSSSSPDGNR  1620
KASVWQSSGS SPVAGSAKAS GWQPSPRESS KSKPNPTWGA GQNRNSSSSH QSTTPTAKYS  1680
SETPRRQGNS NTNSAGWGDA IGNNKSWHSP SGNASSRGSH SSHHHDRHNQ GSEPWRGGSN  1740
HSRRSDHRQE HGNGGSSRSS SSRGQSQRGI CRYYENGYCR KGTSCQFLHR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1320324RKRRR
2321335KRRRNSFSGKRGRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0738670.0AC073867.6 Oryza sativa chromosome 10 BAC OSJNBa0055O03 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614387.10.0zinc finger CCCH domain-containing protein 19 isoform X2
TrEMBLA0A0E0M9M70.0A0A0E0M9M7_ORYPU; Uncharacterized protein
STRINGOPUNC10G14000.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.11e-167nucleic acid binding;zinc ion binding;DNA binding