PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G11850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92114.2 Da    PI: 5.5956
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G11850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.89.3e-192785357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le++++++++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  OPUNC10G11850.1 27 KYVRYTPEQVEALERVYAECPKPSSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85
                     5678****************************************************996 PP

2START159.33.1e-501653722204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv ++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+      g  g+++l
  OPUNC10G11850.1 165 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMFPAGngGTIEL 257
                      7899******************************************************9999999999.***********999999999***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+
  OPUNC10G11850.1 258 VYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRP 351
                      ***************************************9999998888899****************************************** PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s+++ ++k+++a+l++ +
  OPUNC10G11850.1 352 LYESSRVVAQKMTTAALRHIR 372
                      *****************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-19782IPR009057Homeodomain-like
PROSITE profilePS5007115.6292286IPR001356Homeobox domain
SMARTSM003892.9E-162490IPR001356Homeobox domain
SuperFamilySSF466891.41E-162690IPR009057Homeodomain-like
CDDcd000866.77E-172787No hitNo description
PfamPF000462.5E-162885IPR001356Homeobox domain
CDDcd146862.24E-679118No hitNo description
Gene3DG3DSA:1.20.5.1702.5E-483132No hitNo description
PROSITE profilePS5084827.397155383IPR002913START domain
CDDcd088758.97E-73159375No hitNo description
SMARTSM002343.5E-37164374IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-21164350IPR023393START-like domain
SuperFamilySSF559611.51E-36165376No hitNo description
PfamPF018523.8E-48165372IPR002913START domain
PfamPF086706.2E-49695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MAAAVAMRSG SGSDGGGYDK AGMDSGKYVR YTPEQVEALE RVYAECPKPS SSRRQQLLRE  60
CPILANIEPK QIKVWFQNRR CRDKQRKEAS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL  120
VHENAYMKQQ LQNPPLANDT SCESNVTTPQ NPLRDASNPS GLLTIAEETL TEFLSKATGT  180
AVDWVPMPGM KPGPDSFGIV AVSHGCRGVA ARACGLVNLE PTKIVEILKD RPSWFRDCRS  240
LEVFTMFPAG NGGTIELVYM QMYAPTTLVP ARDFWTLRYT TTMEDGSLVV CERSLSGSGG  300
GPSTASAQQF VRAEMLPSGY LVRPCEGGGS IVHIVDHLDL EAWSVPEVLR PLYESSRVVA  360
QKMTTAALRH IRQIAQETSG EVVYALGRQP AVLRTFSQRL SRGFNDAISG FNDDGWSVMG  420
GDGIEDVIIA CNAKKVRNTS TSANAFVTPG GVICAKASML LQSVPPAVLV RFLREHRSEW  480
ADYNFDAYSA SSLKTSSCSL PGLRPMRFSG SQIIMPLAHT VENEEILEVV RLEGQTLTHD  540
DGLMSRDIHL LQLCTGIDEK SMGSCFQLVF APIDELFPDD APLISSGFRV IPLDMKTDGT  600
PAGRTLDLAS SLEVGSTAQP TGDASLDDCN LRSVLTIAFQ FPYEMHLQDS VATMARQYVR  660
SIVSSVQRVS MAISPSRSGL NAGQKIISGF PEATTLARWI CQSYQLHLGV ELLRQADDAG  720
ESLLKMLWDY EDAILCCSFK EKPVFTFANE MGLNMLETSL VALQDLSLDK IFDEAGRKAL  780
YNEIPKLMEQ GYVYLPGGVC LSGMGRHVSF EQAVAWKVLG EDNNVHCLAF CFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1028300.0AK102830.1 Oryza sativa Japonica Group cDNA clone:J033109G06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614901.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLA0A0E0M8V00.0A0A0E0M8V0_ORYPU; Uncharacterized protein
STRINGOPUNC10G11850.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein