PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC10G11850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 838aa MW: 92114.2 Da PI: 5.5956 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 9.3e-19 | 27 | 85 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps ++r++L +++ +++ +q+kvWFqNrR ++k+ OPUNC10G11850.1 27 KYVRYTPEQVEALERVYAECPKPSSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85 5678****************************************************996 PP | |||||||
2 | START | 159.3 | 3.1e-50 | 165 | 372 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 +aee+++e+++ka+ ++ Wv ++ +++g+++ +++ s++++g a+ra+g+v ++++ ve+l d++ W +++++ e+ g g+++l OPUNC10G11850.1 165 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMFPAGngGTIEL 257 7899******************************************************9999999999.***********999999999***** PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183 +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++ p+ +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+ OPUNC10G11850.1 258 VYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRP 351 ***************************************9999998888899****************************************** PP HHHHHHHHHHHHHHHHTXXXX CS START 184 lvksglaegaktwvatlqrqc 204 l++s+++ ++k+++a+l++ + OPUNC10G11850.1 352 LYESSRVVAQKMTTAALRHIR 372 *****************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.3E-19 | 7 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.629 | 22 | 86 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-16 | 24 | 90 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.41E-16 | 26 | 90 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.77E-17 | 27 | 87 | No hit | No description |
Pfam | PF00046 | 2.5E-16 | 28 | 85 | IPR001356 | Homeobox domain |
CDD | cd14686 | 2.24E-6 | 79 | 118 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.5E-4 | 83 | 132 | No hit | No description |
PROSITE profile | PS50848 | 27.397 | 155 | 383 | IPR002913 | START domain |
CDD | cd08875 | 8.97E-73 | 159 | 375 | No hit | No description |
SMART | SM00234 | 3.5E-37 | 164 | 374 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.3E-21 | 164 | 350 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.51E-36 | 165 | 376 | No hit | No description |
Pfam | PF01852 | 3.8E-48 | 165 | 372 | IPR002913 | START domain |
Pfam | PF08670 | 6.2E-49 | 695 | 837 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 838 aa Download sequence Send to blast |
MAAAVAMRSG SGSDGGGYDK AGMDSGKYVR YTPEQVEALE RVYAECPKPS SSRRQQLLRE 60 CPILANIEPK QIKVWFQNRR CRDKQRKEAS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL 120 VHENAYMKQQ LQNPPLANDT SCESNVTTPQ NPLRDASNPS GLLTIAEETL TEFLSKATGT 180 AVDWVPMPGM KPGPDSFGIV AVSHGCRGVA ARACGLVNLE PTKIVEILKD RPSWFRDCRS 240 LEVFTMFPAG NGGTIELVYM QMYAPTTLVP ARDFWTLRYT TTMEDGSLVV CERSLSGSGG 300 GPSTASAQQF VRAEMLPSGY LVRPCEGGGS IVHIVDHLDL EAWSVPEVLR PLYESSRVVA 360 QKMTTAALRH IRQIAQETSG EVVYALGRQP AVLRTFSQRL SRGFNDAISG FNDDGWSVMG 420 GDGIEDVIIA CNAKKVRNTS TSANAFVTPG GVICAKASML LQSVPPAVLV RFLREHRSEW 480 ADYNFDAYSA SSLKTSSCSL PGLRPMRFSG SQIIMPLAHT VENEEILEVV RLEGQTLTHD 540 DGLMSRDIHL LQLCTGIDEK SMGSCFQLVF APIDELFPDD APLISSGFRV IPLDMKTDGT 600 PAGRTLDLAS SLEVGSTAQP TGDASLDDCN LRSVLTIAFQ FPYEMHLQDS VATMARQYVR 660 SIVSSVQRVS MAISPSRSGL NAGQKIISGF PEATTLARWI CQSYQLHLGV ELLRQADDAG 720 ESLLKMLWDY EDAILCCSFK EKPVFTFANE MGLNMLETSL VALQDLSLDK IFDEAGRKAL 780 YNEIPKLMEQ GYVYLPGGVC LSGMGRHVSF EQAVAWKVLG EDNNVHCLAF CFVNWSFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102830 | 0.0 | AK102830.1 Oryza sativa Japonica Group cDNA clone:J033109G06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015614901.1 | 0.0 | homeobox-leucine zipper protein HOX9 | ||||
Swissprot | A2Z8L4 | 0.0 | HOX9_ORYSI; Homeobox-leucine zipper protein HOX9 | ||||
TrEMBL | A0A0E0M8V0 | 0.0 | A0A0E0M8V0_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC10G11850.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |