PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G11840.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 701aa    MW: 75935.2 Da    PI: 6.9194
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G11840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.51e-22130231199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   ++
  OPUNC10G11840.1 130 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RT 219
                      89****************************996555555..8999*********************************************..44 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      + +el+v+++r+
  OPUNC10G11840.1 220 RLGELCVGIRRA 231
                      78999****996 PP
2Auxin_resp117.79.3e-39291374183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa+ a+++++Fev Y+Prast+eFvvk+++v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dp rWpnS+Wr+L+
  OPUNC10G11840.1 291 AASLAANGQPFEVAYYPRASTPEFVVKAASVQAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADPNRWPNSPWRLLQ 374
                      68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-36120233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-28127233IPR015300DNA-binding pseudobarrel domain
CDDcd100177.82E-21129230No hitNo description
SMARTSM010195.0E-21130232IPR003340B3 DNA binding domain
PfamPF023627.8E-21130231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.421130232IPR003340B3 DNA binding domain
PfamPF065071.1E-33291374IPR010525Auxin response factor
PROSITE profilePS5174517.143606686IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MKEVGEEEEV RCLDPQLWHA CAGGMVQMPA ARSRVYYFAQ GHAEHANGGG VAAAAELAAA  60
TGPRALPALV LCRVEGVQFL ADRESDEVYA KIRLVPVSPG EVEFREPDEL CPLGGGGGDA  120
SESPEKPTSF AKTLTQSDAN NGGGFSVPRY CAETIFPKLD YRADPPVQTV LAKDVHGVVW  180
KFRHIYRGTP RRHLLTTGWS TFVNQKKLVA GDSIVFLRTR LGELCVGIRR AKRVACGGME  240
CMSGWNTPGY GGGGFSAFLK EEENKLMKGH GGGGYMKGKG NKVKMADVVE AASLAANGQP  300
FEVAYYPRAS TPEFVVKAAS VQAAMRIQWC SGMRFKMAFE TEDSSRISWF MGTISSVQVA  360
DPNRWPNSPW RLLQVTWDEP DLLQNVKCVS PWLVELVSSI PPIHLGPFSS PRKKLRVPPH  420
PDFPFEGHLL NPIFHGNPLG PSNSPLCCYP DTAPAGIQGA RHAQFGLPLT DHQLNKLHLG  480
LFHGGSFNRL DAITPPSRIS KGFVVSSAPA HDNVSCLLSI GTPQVAEKSD ERKTTPHIML  540
FGKAIFTEQQ ITSSGSTETL SPGVTGNSSP NGNAHKTGNA SDGSGSSVCI GFSSQGHEAS  600
DLGLEVGHCK VFMESEDVGR TIDLSVFGSY EELYGRLADM FGIEKEEIIN HLHFRDAAGV  660
VKHPGEVPFS DFMKAARRLT IIAGDRERIE RPLIECLVEQ A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-78139937392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3186170.0AK318617.1 Oryza sativa Japonica Group cDNA, clone: J100090H20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614842.10.0auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLA0A0E0M8U80.0A0A0E0M8U8_ORYPU; Auxin response factor
STRINGOPUNC10G11840.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]