PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC10G09700.4

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

E2F/DP

Protein Properties

Length: 1489aa MW: 164794 Da PI: 8.2896

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC10G09700.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	82.9	2.7e-26	98	184	3	71
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 +++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg OPUNC10G09700.4 98 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnnfaspdpenpntpqfDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 184 689*****...*999********************************************************.*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.1E-43	92	190	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM01372	3.9E-37	96	184	IPR003316	E2F/DP family, winged-helix DNA-binding domain
SuperFamily	SSF46785	4.08E-19	99	185	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF02319	4.0E-23	99	184	IPR003316	E2F/DP family, winged-helix DNA-binding domain
CDD	cd14458	6.66E-38	189	292	IPR014889	Transcription factor DP, C-terminal
SuperFamily	SSF144074	2.2E-39	191	295	No hit	No description
SMART	SM01138	3.7E-58	191	322	IPR014889	Transcription factor DP, C-terminal
Pfam	PF08781	7.3E-38	192	300	IPR014889	Transcription factor DP, C-terminal
Gene3D	G3DSA:1.10.630.10	7.3E-7	343	388	IPR001128	Cytochrome P450
Pfam	PF00067	2.8E-5	343	382	IPR001128	Cytochrome P450
SuperFamily	SSF48264	5.5E-7	343	382	IPR001128	Cytochrome P450
Gene3D	G3DSA:1.10.630.10	3.0E-123	448	916	IPR001128	Cytochrome P450
SuperFamily	SSF48264	3.93E-117	451	919	IPR001128	Cytochrome P450
Pfam	PF00067	3.7E-93	454	913	IPR001128	Cytochrome P450
PRINTS	PR00463	2.0E-30	483	502	IPR002401	Cytochrome P450, E-class, group I
PRINTS	PR00463	2.0E-30	507	528	IPR002401	Cytochrome P450, E-class, group I
PRINTS	PR00463	2.0E-30	601	619	IPR002401	Cytochrome P450, E-class, group I
PRINTS	PR00463	2.0E-30	714	731	IPR002401	Cytochrome P450, E-class, group I
PRINTS	PR00385	6.4E-7	725	742	IPR001128	Cytochrome P450
PRINTS	PR00463	2.0E-30	734	760	IPR002401	Cytochrome P450, E-class, group I
PRINTS	PR00463	2.0E-30	778	796	IPR002401	Cytochrome P450, E-class, group I
PRINTS	PR00385	6.4E-7	779	790	IPR001128	Cytochrome P450
PRINTS	PR00463	2.0E-30	819	843	IPR002401	Cytochrome P450, E-class, group I
PRINTS	PR00463	2.0E-30	855	865	IPR002401	Cytochrome P450, E-class, group I
PRINTS	PR00385	6.4E-7	856	865	IPR001128	Cytochrome P450
PROSITE pattern	PS00086	0	858	867	IPR017972	Cytochrome P450, conserved site
PRINTS	PR00463	2.0E-30	865	888	IPR002401	Cytochrome P450, E-class, group I
Gene3D	G3DSA:1.10.630.10	7.6E-125	1006	1483	IPR001128	Cytochrome P450
SuperFamily	SSF48264	7.2E-117	1009	1483	IPR001128	Cytochrome P450
Pfam	PF00067	2.3E-91	1012	1464	IPR001128	Cytochrome P450
PROSITE pattern	PS00086	0	1419	1428	IPR017972	Cytochrome P450, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055114	Biological Process	oxidation-reduction process
GO:0005634	Cellular Component	nucleus
GO:0005667	Cellular Component	transcription factor complex
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005506	Molecular Function	iron ion binding
GO:0016705	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	Molecular Function	heme binding

Sequence ? help Back to Top
Protein Sequence Length: 1489 aa Download sequence Send to blast
MVSGAAHSAS TSGGGGGGSE GSPTGRAAPG MQGGGGGGGG ATPAASASAS TPASETTVAR 60 RLDGLDIQGD DAPSSQPATS KKKKRGPGTR ATGPDKGGRG LRQFSMKVCE KVESKGRTTY 120 NEVADELVAE FADPNNNFAS PDPENPNTPQ FDEKNIRRRV YDALNVLMAM DIISKDKKEI 180 QWKGLPRTSM SDVEELKTEI IGLKGRIDKK NAYLQELEDQ FVGLQNLAQR NEQLYGSGNA 240 PSGGVALPFI LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDSFVLK ALGFSGKEPD 300 DTQARVGNGE HVFSSQRNIK HHSKLDHGRG HQVAKSNGKG AFEVRRAFQG KNTITKDDVV 360 KLSYLKMVTK ESLRMHCPVP LLGPESEKID TREAPGLVEP KRTSLYLHPV TRVAPSTPVT 420 LMLALAVSVS VLLVVVVVIS KLVSYATRPR LNLPPGPWTL PVIGSLHHLV RSPSIHRSMR 480 ALAEKHGHLM QIRLGEVFAV VVSSPEAAEQ ILKSQDITFA DRFLSTTIGM ITFGGNDLAF 540 APYGERWRQL RKLCTLELLT AARVRSFRRI REEEVARLVR DLATSAAAGE AVNMSDKMAK 600 LTNDIVVRCC VGGRTKYRDE FLDALRVALD QTTWLTVADV FPSSKLAHML GTAPRRALAG 660 RKKMEHILEQ IIQERKEIMD RSSHGGDGEA VNTNECFVDV LLRLQKDGNT PIPITNEIIV 720 DIFSGGSETS SITLNWTMAE LVRKPRVIAK AHVEVRQTFQ GKNTITEDDG VNRLTYLKMV 780 IKESLRMHCP VPLLGPRKCR EKCKVMDYDI PKNTTILVNA WAICRDPTYW DDAEEFKPER 840 FKNNSIGYKG SNFEFLPFGS GRRMCAGMNL GIANVELPLA SLLYYFDWKL PDGMLPEDVD 900 MRDAPGLLVG PRTSLILFPV KDGWRQPSIC CNISGGHLYA GNHIVVCGRI GHRISDPARH 960 RVFLVFSVMF FSRVAACCIW WHLLLTLAVS VVFILISKLV YRDTNKPRLN LPPGPWTLPV 1020 IGSIHHLMRS PSIHRSMRSL AEKHGPLMQV WLGEVPAVVV SSTEAAEEVL KNHDVRFADR 1080 FISTTLGTIT FGGNDLAFAP YGERWRQLKM LCTQELLTAA RVRSFRRIRE EEVARLVQDL 1140 AAGDGEVAVN LSEKIARLVN DIMVRCCVGG RSKHRDEFLD ALCTALSQTS WLTVADLFPS 1200 SKLARMVGTA PRRALASRKK MEHILEQIIQ EREEMMDRSG DGGDSEAVPG NECFLDVLLR 1260 LQKEGDTPIP ITMELIVMLL FDIVSGGTET STIVLNWTMA ELIHTPRVMA KAHAEVRQTF 1320 QAKSTITEDD GISGLTYLKM VIKESLRMHC PVPLLGPRRC RETCKVMGYD ILKDTTVFVN 1380 AWAMCRSSTY WDDAEEFKPE RFENKCIDYK GSSFEFVPFG SGRRMCAGMN LGIADVELPL 1440 ASLLYHFDWK LPDGMLPKDI DMQEAPGLFG GRRTSLIICP ITRVAPSDL

Sequence ? help Back to Top

Protein Sequence Length: 1489 aa Download sequence Send to blast

MVSGAAHSAS TSGGGGGGSE GSPTGRAAPG MQGGGGGGGG ATPAASASAS TPASETTVAR  60
RLDGLDIQGD DAPSSQPATS KKKKRGPGTR ATGPDKGGRG LRQFSMKVCE KVESKGRTTY  120
NEVADELVAE FADPNNNFAS PDPENPNTPQ FDEKNIRRRV YDALNVLMAM DIISKDKKEI  180
QWKGLPRTSM SDVEELKTEI IGLKGRIDKK NAYLQELEDQ FVGLQNLAQR NEQLYGSGNA  240
PSGGVALPFI LVQTRPHATV EVEISEDMQL VHFDFNSTPF ELHDDSFVLK ALGFSGKEPD  300
DTQARVGNGE HVFSSQRNIK HHSKLDHGRG HQVAKSNGKG AFEVRRAFQG KNTITKDDVV  360
KLSYLKMVTK ESLRMHCPVP LLGPESEKID TREAPGLVEP KRTSLYLHPV TRVAPSTPVT  420
LMLALAVSVS VLLVVVVVIS KLVSYATRPR LNLPPGPWTL PVIGSLHHLV RSPSIHRSMR  480
ALAEKHGHLM QIRLGEVFAV VVSSPEAAEQ ILKSQDITFA DRFLSTTIGM ITFGGNDLAF  540
APYGERWRQL RKLCTLELLT AARVRSFRRI REEEVARLVR DLATSAAAGE AVNMSDKMAK  600
LTNDIVVRCC VGGRTKYRDE FLDALRVALD QTTWLTVADV FPSSKLAHML GTAPRRALAG  660
RKKMEHILEQ IIQERKEIMD RSSHGGDGEA VNTNECFVDV LLRLQKDGNT PIPITNEIIV  720
DIFSGGSETS SITLNWTMAE LVRKPRVIAK AHVEVRQTFQ GKNTITEDDG VNRLTYLKMV  780
IKESLRMHCP VPLLGPRKCR EKCKVMDYDI PKNTTILVNA WAICRDPTYW DDAEEFKPER  840
FKNNSIGYKG SNFEFLPFGS GRRMCAGMNL GIANVELPLA SLLYYFDWKL PDGMLPEDVD  900
MRDAPGLLVG PRTSLILFPV KDGWRQPSIC CNISGGHLYA GNHIVVCGRI GHRISDPARH  960
RVFLVFSVMF FSRVAACCIW WHLLLTLAVS VVFILISKLV YRDTNKPRLN LPPGPWTLPV  1020
IGSIHHLMRS PSIHRSMRSL AEKHGPLMQV WLGEVPAVVV SSTEAAEEVL KNHDVRFADR  1080
FISTTLGTIT FGGNDLAFAP YGERWRQLKM LCTQELLTAA RVRSFRRIRE EEVARLVQDL  1140
AAGDGEVAVN LSEKIARLVN DIMVRCCVGG RSKHRDEFLD ALCTALSQTS WLTVADLFPS  1200
SKLARMVGTA PRRALASRKK MEHILEQIIQ EREEMMDRSG DGGDSEAVPG NECFLDVLLR  1260
LQKEGDTPIP ITMELIVMLL FDIVSGGTET STIVLNWTMA ELIHTPRVMA KAHAEVRQTF  1320
QAKSTITEDD GISGLTYLKM VIKESLRMHC PVPLLGPRRC RETCKVMGYD ILKDTTVFVN  1380
AWAMCRSSTY WDDAEEFKPE RFENKCIDYK GSSFEFVPFG SGRRMCAGMN LGIADVELPL  1440
ASLLYHFDWK LPDGMLPKDI DMQEAPGLFG GRRTSLIICP ITRVAPSDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ylw_A	4e-71	432	1483	6	494	Ferruginol synthase
5ym3_A	4e-71	432	1483	6	494	Ferruginol synthase
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Enzyme of the diterpenoid metabolism involved in the biosynthesis of antibacterial oryzalides such as phytocassane (PubMed:21985968). Catalyzes the hydroxylation of ent-cassa-12,15-diene to form ent-3beta-hydroxycassa-12,15-dien-2-one (PubMed:25758958). {ECO:0000269\|PubMed:21985968, ECO:0000269\|PubMed:25758958}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK287479	0.0	AK287479.1 Oryza sativa Japonica Group cDNA, clone: J043023O14, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614009.1	0.0	ent-cassadiene hydroxylase-like
Swissprot	Q6YV88	0.0	C71Z7_ORYSJ; Ent-cassadiene hydroxylase
TrEMBL	A0A0E0M821	0.0	A0A0E0M821_ORYPU; Uncharacterized protein
STRING	OPUNC10G09700.2	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03415.1	1e-121	Transcription factor DP

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhong L,Wang K,Tan J,Li W,Li S Putative cytochrome P450 genes in rice genome (Oryza sativa L. ssp. indica) and their EST evidence. Sci. China, C, Life Sci., 2002. 45(5): p. 512-7 [PMID:18759039] Wu Y,Hillwig ML,Wang Q,Peters RJ Parsing a multifunctional biosynthetic gene cluster from rice: Biochemical characterization of CYP71Z6 & 7. FEBS Lett., 2011. 585(21): p. 3446-51 [PMID:21985968] Kitaoka N,Wu Y,Xu M,Peters RJ Optimization of recombinant expression enables discovery of novel cytochrome P450 activity in rice diterpenoid biosynthesis. Appl. Microbiol. Biotechnol., 2015. 99(18): p. 7549-58 [PMID:25758958]