PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC10G08230.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 444aa MW: 46898.3 Da PI: 7.817

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC10G08230.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.6e-39	90	149	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC s++tkfCy+nny+++qPr+fCk C+ryWt+GGa+rnvPvG+grrknk++ OPUNC10G08230.1 90 PDKILPCPRCSSMDTKFCYFNNYNVNQPRHFCKHCQRYWTAGGAMRNVPVGAGRRKNKNA 149 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	79	139	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-31	92	148	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.574	94	148	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	96	132	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MGECRGGDGL IKLFGKTIPV LPDVKDVQQH SGSSSSSTES DVQETTAAAA AADADPSPRS 60 EVVDGESSPQ PGGGEAASHQ QQKEMKLKKP DKILPCPRCS SMDTKFCYFN NYNVNQPRHF 120 CKHCQRYWTA GGAMRNVPVG AGRRKNKNAA AAAASHFLHR VRACAAAAAM PMTPHDATNA 180 TVLSFGGGGA HDAPPVTLDL ADKMTRINKE GVAVHARNAD AGACSEVSSN RDDEHISQSG 240 NIVAKPANGL QQQHPPPHPA MNGGGIWPYS CAPSPTYYTS GIAIPIYPAA PAYWGCMIPP 300 PGAWSLPWPP AVQSQAISSS SPPTSAAPSV SSFTLGKHPR EGGDHEARDH HGHGNGKVWV 360 PKTIRIDNAD EVARSSIRSL FAFRGGDKAD DNDDDDTGVH KLAATVFEPK RDGKTAKHPV 420 ITSLPLLHTN PVALTRSATF QEGS

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MGECRGGDGL IKLFGKTIPV LPDVKDVQQH SGSSSSSTES DVQETTAAAA AADADPSPRS  60
EVVDGESSPQ PGGGEAASHQ QQKEMKLKKP DKILPCPRCS SMDTKFCYFN NYNVNQPRHF  120
CKHCQRYWTA GGAMRNVPVG AGRRKNKNAA AAAASHFLHR VRACAAAAAM PMTPHDATNA  180
TVLSFGGGGA HDAPPVTLDL ADKMTRINKE GVAVHARNAD AGACSEVSSN RDDEHISQSG  240
NIVAKPANGL QQQHPPPHPA MNGGGIWPYS CAPSPTYYTS GIAIPIYPAA PAYWGCMIPP  300
PGAWSLPWPP AVQSQAISSS SPPTSAAPSV SSFTLGKHPR EGGDHEARDH HGHGNGKVWV  360
PKTIRIDNAD EVARSSIRSL FAFRGGDKAD DNDDDDTGVH KLAATVFEPK RDGKTAKHPV  420
ITSLPLLHTN PVALTRSATF QEGS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC021893	0.0	AC021893.18 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence.
GenBank	AP014966	0.0	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015615013.1	0.0	cyclic dof factor 1
TrEMBL	A0A0E0M7J2	0.0	A0A0E0M7J2_ORYPU; Uncharacterized protein
STRING	OPUNC10G08230.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	3e-38	cycling DOF factor 3