PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G07690.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 528aa    MW: 56920.6 Da    PI: 5.2063
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G07690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM835.9e-26391751127
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya..tgkrknratksgyWkatgkd 89 
                      +p Gf F P+d el     +k v+gk   +l++v+++++i++++P  L+ + + ++e+  +yfFs+r+ +++  +++r++r+++ g+Wka+g +
  OPUNC10G07690.1  39 MPIGFYFVPKDLELFAILRCKLVRGKLpGTLNNVFEHIRILEFHPALLHeTYIGNKEDgYIYFFSRRQFTTKagNKRRPTRVADGGTWKASGGS 132
                      699************776666677666444456799************84455555553569999998655533788999*9************ PP

              NAM  90 kevlsk..kgelvglkktLvfy...kgrapkgektdWvmheyr 127
                      k+v+sk  +g +vg k t+vfy    + +++++kt+W mhe++
  OPUNC10G07690.1 133 KTVKSKkvGGIDVGQKLTMVFYerrFEGDRNPVKTNWGMHEFT 175
                      *****9888899**********43313466778********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-3533199IPR003441NAC domain
PROSITE profilePS5100532.18239196IPR003441NAC domain
PfamPF023657.1E-1440175IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MAERPPADGD GGGGSSSNNG KWKGKEKVVP EYGKNRHGMP IGFYFVPKDL ELFAILRCKL  60
VRGKLPGTLN NVFEHIRILE FHPALLHETY IGNKEDGYIY FFSRRQFTTK AGNKRRPTRV  120
ADGGTWKASG GSKTVKSKKV GGIDVGQKLT MVFYERRFEG DRNPVKTNWG MHEFTKIIHG  180
SKNQLEDLAV YRLYKIKRKE DAEPLNAAAA TSSTDNPSTS SALPPPTPPR PLPGMAGSSS  240
AMPLLPLQLP GLTGSSSAMS LPLQLPGIAG SSSPLPLPLS PSGLTRGMMS TADQANMAST  300
SQASTPSSEL LQDWYDEYEI TYSAVAPPSP STISWPTGWW PSPNGWPVQH NGYLGMAADP  360
TSYMLKHVLP TAAIPPEPMA PPMSSPAPPP AVDHHRLSPP HDAAGNYNHP ELADYGGGVQ  420
VQHEHQRQHH QQEPQALVVD GEDSYGAMAD GDDAQLGGAE FDPEGIAEMV AHIMDGQFEL  480
KFEDNTIVQY KEVFPDDDEV VSAAPMMIDG GGDGDGADGG DGDDPFDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-123919517164NO APICAL MERISTEM PROTEIN
1ut4_B4e-123919517164NO APICAL MERISTEM PROTEIN
1ut7_A4e-123919517164NO APICAL MERISTEM PROTEIN
1ut7_B4e-123919517164NO APICAL MERISTEM PROTEIN
4dul_A4e-123919517164NAC domain-containing protein 19
4dul_B4e-123919517164NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0923881e-170AC092388.5 Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence.
GenBankAC1221441e-170AC122144.1 Oryza sativa Japonica Group chromosome 10 clone OSJNAa0011L09, complete sequence.
GenBankAP0149661e-170AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651177.10.0NAC transcription factor NAM-B2 isoform X1
TrEMBLA0A0E0M7C70.0A0A0E0M7C7_ORYPU; Uncharacterized protein
STRINGOPUNC10G07690.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.28e-12NAC family protein