PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC10G02630.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 272aa MW: 28268.4 Da PI: 6.9166

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC10G02630.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.7	1.1e-39	33	133	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++C++apyf +e +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ar+rdPvyG+v++i++lq+q++ l++e OPUNC10G02630.1 33 PCGACKFLRRKCVQGCIFAPYFDSEAgAAHFAAVHKVFGASNVSKLLQQIPAHRRLDAVVTICYEAQARLRDPVYGCVAHIFHLQHQVAGLQSE 126 7*******************998879************************************************************** PP DUF260 94 lallkee 100 l++l+ + OPUNC10G02630.1 127 LNYLQGH 133 99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038127	1.4E-133	1	272	IPR017394	LOB domain-containing protein 18/20
PROSITE profile	PS50891	23.102	32	134	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.7E-40	33	131	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MSSSVVASAS GSGGGGGGGG GGGGGAGGGG GGPCGACKFL RRKCVQGCIF APYFDSEAGA 60 AHFAAVHKVF GASNVSKLLQ QIPAHRRLDA VVTICYEAQA RLRDPVYGCV AHIFHLQHQV 120 AGLQSELNYL QGHLSTMELP SPPPYVAGPA PAPPQPQPLM PMTAAANFNF SDLPSSSSNL 180 PVVTADLSTL FDPLPAAQPQ WGVYQQQQQQ QHHHQQLHHH PYDRMGDGSS SSRGGDDDGS 240 DGGDLQALAR ELLDRHGRSA SSSKLEPPPH TQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-37	29	128	7	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-37	29	128	7	105	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB200236	0.0	AB200236.1 Oryza sativa Japonica Group CRLL2 mRNA for LOB domain protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015613830.1	1e-125	LOB domain-containing protein 30
Swissprot	O81323	4e-61	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A0E0M5P7	0.0	A0A0E0M5P7_ORYPU; Uncharacterized protein
STRING	OPUNC10G02630.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	3e-58	LOB domain-containing protein 18

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]