PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G00600.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family BBR-BPC
Protein Properties Length: 427aa    MW: 46414.8 Da    PI: 10.3116
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G00600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind397.91.4e-121794271301
        GAGA_bind   1 mdddgsrernkg.yyepaaslkenlglqlmssia.erdaki............rernlalsekkaavaerd....................... 57 
                      mddd+s++ ++g ++e+    ++nlglqlmss++ +rd+k+            +++++  +++++++++rd                       
  OPUNC10G00600.1  79 MDDDASMSMRWGgFFESP---ARNLGLQLMSSVPaDRDTKQllsatpflhhqnHQQHV-PHHHHQPHHPRDcggngngngggvpnggamppppa 168
                      9*******55877***99...88**********99**************998777777.99********************************* PP

        GAGA_bind  58 ........maflqrdkalae..rnkalverdnkllalllvensla...salpvgvqvlsgtksidslqqlse..pqledsave.lreeekleal 135
                              m+f+++d++++   +++++++r++k+l++l+v +s++   +++p g+++++gt+s+++lq++++  pq ++++ + +++ee+++++
  OPUNC10G00600.1 169 teappsvaMNFVRNDMWMHPqqQQHHHHPREHKVLHNLTVGHSSShiaHHDPLGYGMIPGTHSAHTLQMMQQtePQQQPPPPPqQPKEECISSP 262
                      ******************98435567889*************9988999*****************99955555888888777799******** PP

        GAGA_bind 136 pieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGG 229
                       iee++++++e + +kkrq++++pk+++akk+kk s+ ++++ +++   +r++ ++k+i++v+ng++lD s++P+P+CsCtGa++qCY+WG+GG
  OPUNC10G00600.1 263 LIEENVPVIDEPPPPKKRQQGRQPKVPRAKKPKK-SAPPREDGAPNAPAPRRRGPRKNIGMVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGG 355
                      **********************************.55555666555555********************************************* PP

        GAGA_bind 230 WqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                      WqSaCCtttiS+yPLP+stkrrgaRiagrKmS+gafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir
  OPUNC10G00600.1 356 WQSACCTTTISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 427
                      ***********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012265.3E-19979427IPR010409GAGA-binding transcriptional activator
PfamPF062174.0E-12179427IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MAQSTYISLP PLSINKKVIK KKRNSFSLLL LLFEDISPSV SGADLHPPGD QGAGPPPPSL  60
PPAASAASRP GFGGGGGEMD DDASMSMRWG GFFESPARNL GLQLMSSVPA DRDTKQLLSA  120
TPFLHHQNHQ QHVPHHHHQP HHPRDCGGNG NGNGGGVPNG GAMPPPPATE APPSVAMNFV  180
RNDMWMHPQQ QQHHHHPREH KVLHNLTVGH SSSHIAHHDP LGYGMIPGTH SAHTLQMMQQ  240
TEPQQQPPPP PQQPKEECIS SPLIEENVPV IDEPPPPKKR QQGRQPKVPR AKKPKKSAPP  300
REDGAPNAPA PRRRGPRKNI GMVINGIDLD LSRIPTPICS CTGAPQQCYR WGAGGWQSAC  360
CTTTISTYPL PMSTKRRGAR IAGRKMSHGA FKKVLEKLAG EGYNLNNPID LKTFWAKHGT  420
NKFVTIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612725.11e-175barley B recombinant-like protein A isoform X1
RefseqXP_015612727.11e-175barley B recombinant-like protein A isoform X1
RefseqXP_015612730.11e-175barley B recombinant-like protein B isoform X1
RefseqXP_015612731.11e-175barley B recombinant-like protein B isoform X1
SwissprotP0DH881e-176BBRA_ORYSJ; Barley B recombinant-like protein A
SwissprotP0DH891e-176BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBLA0A0E0M5180.0A0A0E0M518_ORYPU; Uncharacterized protein
STRINGOPUNC10G00600.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.33e-60basic pentacysteine 2
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]