PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC10G00600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 427aa MW: 46414.8 Da PI: 10.3116 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 397.9 | 1.4e-121 | 79 | 427 | 1 | 301 |
GAGA_bind 1 mdddgsrernkg.yyepaaslkenlglqlmssia.erdaki............rernlalsekkaavaerd....................... 57 mddd+s++ ++g ++e+ ++nlglqlmss++ +rd+k+ +++++ +++++++++rd OPUNC10G00600.1 79 MDDDASMSMRWGgFFESP---ARNLGLQLMSSVPaDRDTKQllsatpflhhqnHQQHV-PHHHHQPHHPRDcggngngngggvpnggamppppa 168 9*******55877***99...88**********99**************998777777.99********************************* PP GAGA_bind 58 ........maflqrdkalae..rnkalverdnkllalllvensla...salpvgvqvlsgtksidslqqlse..pqledsave.lreeekleal 135 m+f+++d++++ +++++++r++k+l++l+v +s++ +++p g+++++gt+s+++lq++++ pq ++++ + +++ee+++++ OPUNC10G00600.1 169 teappsvaMNFVRNDMWMHPqqQQHHHHPREHKVLHNLTVGHSSShiaHHDPLGYGMIPGTHSAHTLQMMQQtePQQQPPPPPqQPKEECISSP 262 ******************98435567889*************9988999*****************99955555888888777799******** PP GAGA_bind 136 pieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGG 229 iee++++++e + +kkrq++++pk+++akk+kk s+ ++++ +++ +r++ ++k+i++v+ng++lD s++P+P+CsCtGa++qCY+WG+GG OPUNC10G00600.1 263 LIEENVPVIDEPPPPKKRQQGRQPKVPRAKKPKK-SAPPREDGAPNAPAPRRRGPRKNIGMVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGG 355 **********************************.55555666555555********************************************* PP GAGA_bind 230 WqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 WqSaCCtttiS+yPLP+stkrrgaRiagrKmS+gafkk+LekLa+eGy+l+np+DLk++WAkHGtnkfvtir OPUNC10G00600.1 356 WQSACCTTTISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 427 ***********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 5.3E-199 | 79 | 427 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 4.0E-121 | 79 | 427 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0050793 | Biological Process | regulation of developmental process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MAQSTYISLP PLSINKKVIK KKRNSFSLLL LLFEDISPSV SGADLHPPGD QGAGPPPPSL 60 PPAASAASRP GFGGGGGEMD DDASMSMRWG GFFESPARNL GLQLMSSVPA DRDTKQLLSA 120 TPFLHHQNHQ QHVPHHHHQP HHPRDCGGNG NGNGGGVPNG GAMPPPPATE APPSVAMNFV 180 RNDMWMHPQQ QQHHHHPREH KVLHNLTVGH SSSHIAHHDP LGYGMIPGTH SAHTLQMMQQ 240 TEPQQQPPPP PQQPKEECIS SPLIEENVPV IDEPPPPKKR QQGRQPKVPR AKKPKKSAPP 300 REDGAPNAPA PRRRGPRKNI GMVINGIDLD LSRIPTPICS CTGAPQQCYR WGAGGWQSAC 360 CTTTISTYPL PMSTKRRGAR IAGRKMSHGA FKKVLEKLAG EGYNLNNPID LKTFWAKHGT 420 NKFVTIR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00253 | DAP | Transfer from AT2G01930 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012618 | 0.0 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612725.1 | 1e-175 | barley B recombinant-like protein A isoform X1 | ||||
Refseq | XP_015612727.1 | 1e-175 | barley B recombinant-like protein A isoform X1 | ||||
Refseq | XP_015612730.1 | 1e-175 | barley B recombinant-like protein B isoform X1 | ||||
Refseq | XP_015612731.1 | 1e-175 | barley B recombinant-like protein B isoform X1 | ||||
Swissprot | P0DH88 | 1e-176 | BBRA_ORYSJ; Barley B recombinant-like protein A | ||||
Swissprot | P0DH89 | 1e-176 | BBRB_ORYSJ; Barley B recombinant-like protein B | ||||
TrEMBL | A0A0E0M518 | 0.0 | A0A0E0M518_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC10G00600.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2211 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14685.3 | 3e-60 | basic pentacysteine 2 |
Publications ? help Back to Top | |||
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