PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC10G00220.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 287aa    MW: 31687.2 Da    PI: 8.2688
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC10G00220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-18141195256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tk+q   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  OPUNC10G00220.1 141 RKKLRLTKDQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 195
                      788899***********************************************98 PP
2HD-ZIP_I/II124.64.7e-40141229190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      +kk+rl+k+q++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr +
  OPUNC10G00220.1 141 RKKLRLTKDQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR-A 229
                      69*************************************************************************************9.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.22E-18131198IPR009057Homeodomain-like
PROSITE profilePS5007116.973137197IPR001356Homeobox domain
SMARTSM003891.5E-15139201IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-17139200IPR009057Homeodomain-like
PfamPF000461.5E-15141195IPR001356Homeobox domain
CDDcd000861.24E-16141198No hitNo description
PROSITE patternPS000270172195IPR017970Homeobox, conserved site
SMARTSM003401.9E-20197240IPR003106Leucine zipper, homeobox-associated
PfamPF021832.5E-10197230IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MYGSPCPHSP SPFFFLSISK LHILLHPSLS LPRASCMAQD DQDMGLALGL SLGSGAHNQR  60
EPPSQAACTL EPSLTLSLPA AVSDSGLTTT TPPPPLLVAA GVKVKREMRA QEEEYEYEYE  120
RALYSVQASS VVDDDEGCNS RKKLRLTKDQ SALLEDRFKE HSTLNPKQKV ALAKQLNLRP  180
RQVEVWFQNR RARTKLKQTE VDCELLKRCC ETLTEENRRL HRELQQLRAL SHPGFFMATT  240
LPAATLSICP SCERLAAAGA SPTADRTNNV KPPASHFFSP FAKSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145SRKKLRL
2189197RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0989841e-109FP098984.1 Phyllostachys edulis cDNA clone: bphylf047o12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661591.11e-103PREDICTED: homeobox-leucine zipper protein HOX15-like
SwissprotQ7G7376e-96HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBLA0A0E0M4X80.0A0A0E0M4X8_ORYPU; Uncharacterized protein
STRINGOPUNC10G00220.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-65homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]