PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC09G17350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 584aa MW: 65518.6 Da PI: 5.7591 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.9 | 4.8e-54 | 113 | 242 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yLk+k++g k+el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgkd++v OPUNC09G17350.1 113 LPPGFRFHPTDEELVNYYLKRKIHGLKIEL-DIIPEVDLYKCEPWELAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRV 205 79****************************.99**************84335556888************************************ PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+++g+kktLv+y+grap+g++tdWvmheyrl OPUNC09G17350.1 206 VHQhGGRAIGMKKTLVYYRGRAPQGVRTDWVMHEYRL 242 99978899***************************98 PP | |||||||
2 | NAM | 172.4 | 1.4e-53 | 369 | 496 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yLk+kv+g ++el ++i+evd+yk+ePw+L k + ++++ewyfF +rd+ky++g r+nrat++gyWk+tgkd+++ OPUNC09G17350.1 369 LPPGFRFHPTDEELVNYYLKRKVHGLSIEL-DIIPEVDLYKCEPWELAeKsFLPSKDSEWYFFGPRDRKYPNGCRTNRATRAGYWKSTGKDRRI 461 79****************************.99**************84335566899************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+kktLv+ykgrap+g +t+Wvmheyr+ OPUNC09G17350.1 462 NY-QNRSIGMKKTLVYYKGRAPQGIRTSWVMHEYRI 496 *9.8899***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-64 | 104 | 265 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.881 | 113 | 265 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-29 | 114 | 242 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.1E-62 | 362 | 519 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.297 | 369 | 519 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-29 | 370 | 496 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 584 aa Download sequence Send to blast |
MEKVQASCEG EQGICKRGAK GGHPIDRNLV GGMTTSTAVP TTVPPTPALA ALKNLLIRVV 60 AAAAGKGLSG SSAEEARCLW AKPSAPEEET GQLERPPSHR RPPTSTFMAP VGLPPGFRFH 120 PTDEELVNYY LKRKIHGLKI ELDIIPEVDL YKCEPWELAE KSFLPSRDPE WYFFGPRDRK 180 YPNGFRTNRA TRAGYWKSTG KDRRVVHQHG GRAIGMKKTL VYYRGRAPQG VRTDWVMHEY 240 RLDDKDCEDT MPIQDTYALC RVFKKNAICT EVEELQGQCS MALLEGACQQ LLASGGGGSQ 300 EQYETPSPPD VPVGSTSGGA DAEDDPDKDD SWMQFISDDA WCSSTADGGA EESTSCEEAN 360 WEAMAPVGLP PGFRFHPTDE ELVNYYLKRK VHGLSIELDI IPEVDLYKCE PWELAEKSFL 420 PSKDSEWYFF GPRDRKYPNG CRTNRATRAG YWKSTGKDRR INYQNRSIGM KKTLVYYKGR 480 APQGIRTSWV MHEYRIEESE CENTMGIQDS YALCRIFKKN VVLGEFDKKG ECSSSQAKGN 540 EEQVTDFGDA GQSSGANEND KDNSWMQFIA EDLWCTNKLK SLFT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-51 | 108 | 520 | 10 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-51 | 108 | 520 | 10 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-51 | 108 | 520 | 10 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-51 | 108 | 520 | 10 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-51 | 108 | 520 | 13 | 170 | NAC domain-containing protein 19 |
3swm_B | 3e-51 | 108 | 520 | 13 | 170 | NAC domain-containing protein 19 |
3swm_C | 3e-51 | 108 | 520 | 13 | 170 | NAC domain-containing protein 19 |
3swm_D | 3e-51 | 108 | 520 | 13 | 170 | NAC domain-containing protein 19 |
3swp_A | 3e-51 | 108 | 520 | 13 | 170 | NAC domain-containing protein 19 |
3swp_B | 3e-51 | 108 | 520 | 13 | 170 | NAC domain-containing protein 19 |
3swp_C | 3e-51 | 108 | 520 | 13 | 170 | NAC domain-containing protein 19 |
3swp_D | 3e-51 | 108 | 520 | 13 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-51 | 108 | 520 | 10 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-51 | 108 | 520 | 10 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00363 | DAP | Transfer from AT3G17730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137596 | 0.0 | AC137596.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 9 clone OSJNBb0031H05, complete sequence. | |||
GenBank | AP005564 | 0.0 | AP005564.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1228_C03, complete sequence. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612702.2 | 0.0 | NAC domain-containing protein 86 | ||||
Swissprot | Q9FFI5 | 5e-84 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A0E0M4A4 | 0.0 | A0A0E0M4A4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC09G17350.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3713 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 1e-113 | NAC domain containing protein 57 |
Publications ? help Back to Top | |||
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