PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G15460.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 407aa    MW: 42247.1 Da    PI: 5.1473
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G15460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35351252101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+++ed++++++isw+e+g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll+
  OPUNC09G15460.1  35 FLTKTYQLVEDPAVDDVISWNEDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKRLLC 119
                      9*****************************************************************99.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  OPUNC09G15460.1 120 DIHRRK 125
                      ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.4E-3827119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.0E-5931124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.32E-3532124IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.6E-3235124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-203558IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-207385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-208698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAEQGAGEAD AAGVGGGGAP VAEALAGQRS LPTPFLTKTY QLVEDPAVDD VISWNEDGST  60
FVVWRPAEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANDCF RRGEKRLLCD  120
IHRRKVVAAA APPPPSPGMA TAAAAVASGA VTVAAAPIPM ALPVTRAGSP AHSSEEQVLS  180
SNSGSGEEHR QASGSGSAPG GSASGGDMGE ENERLRRENA RLTRELGHMK KLCNNILLLM  240
SKYAATQHLE GSAGISSIAN CSGESSEAVP PPPPLPPAIL DLMPSCPALA TAAAAAGLAI  300
DVEPDPSARL FGVSIGLKRT RDAAADDEDS GHAADVGEDQ AEHGADVKPE AADPYPGGGG  360
GSSTEASPEP HPWPIYRPTP MYSVQNLVSL QVLGVGAKNG GDIGRKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-271512410129Heat shock factor protein 1
5d5v_B8e-271512410129Heat shock factor protein 1
5d5v_D8e-271512410129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1065250.0AK106525.1 Oryza sativa Japonica Group cDNA clone:002-107-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876147.10.0heat stress transcription factor B-2c isoform X5
SwissprotQ652B00.0HFB2C_ORYSJ; Heat stress transcription factor B-2c
TrEMBLA0A0E0M3M80.0A0A0E0M3M8_ORYPU; Uncharacterized protein
STRINGOPUNC09G15460.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.13e-60HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rerksiri W,Zhang X,Xiong H,Chen X
    Expression and promoter analysis of six heat stress-inducible genes in rice.
    ScientificWorldJournal, 2013. 2013: p. 397401
    [PMID:24459431]