PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G15430.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 915aa    MW: 96601.3 Da    PI: 6.5094
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G15430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.12.2e-21168223156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k
  OPUNC09G15430.1 168 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMK 223
                      688999***********************************************999 PP
2START175.63e-553926211205
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      ela++a++elvk a+ +ep+W  s     e +n+de+ + f++  +     + +ea r+sg+ +  +++lv +l+d + +W+e+++    +a+t
  OPUNC09G15430.1 392 ELALAAMDELVKVAQMDEPLWLPSLdggfETLNYDEYHRAFARVLGqspagYVSEATRESGIAIISSVDLVDSLMDAP-RWSEMFPcvvaRAST 484
                      5899*************************************8865599******************************.*************** PP

                      EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE....-TTS--...-TTSEE-EESSEEEEEEEECTCEE CS
            START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvd....seqkppe..sssvvRaellpSgiliepksnghs 162
                      ++ issg      g +qlm aelq+lsplvp R++vf+R+++q+ +g w++vdvSvd    ++q+ +    ss++ ++llp+g++++++ ng+s
  OPUNC09G15430.1 485 TDIISSGmggtrsGSIQLMHAELQVLSPLVPiREVVFLRFCKQHAEGLWAVVDVSVDailrPDQNGSGgsLSSYMGCRLLPTGCIVQDMNNGYS 578
                      ********************************************************9444345555558899********************** PP

                      EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
            START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                      kvtwv h+++++   h+l+r+l++sg+a ga++w+a lqrqc+
  OPUNC09G15430.1 579 KVTWVVHAEYDETAAHQLYRPLLRSGQALGARRWLASLQRQCQ 621
                      ******************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-22150225IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-23155225IPR009057Homeodomain-like
PROSITE profilePS5007118.301165225IPR001356Homeobox domain
SMARTSM003891.5E-19166229IPR001356Homeobox domain
PfamPF000466.9E-19168223IPR001356Homeobox domain
CDDcd000861.14E-19168225No hitNo description
PROSITE patternPS000270200223IPR017970Homeobox, conserved site
PROSITE profilePS5084841.878383625IPR002913START domain
SuperFamilySSF559611.21E-29386621No hitNo description
SMARTSM002342.9E-39392622IPR002913START domain
PfamPF018527.5E-47392621IPR002913START domain
CDDcd088755.05E-109398621No hitNo description
SuperFamilySSF559611.87E-13641838No hitNo description
SuperFamilySSF559611.87E-13866897No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 915 aa     Download sequence    Send to blast
MPCIAALLMR PSSRFNACQI LSPRLIKNIK LLGSEGIRRS CGLVMSFGGM FDGTGSGVFS  60
YDAGGGGGGG GGLHNSRLLP TPPVPKPGGG FAAPGLSLGL QTMDGGQLGD VNRSLAMMGN  120
GGSGSGGDGD SLGRGREDEN DSRSGSDNLD GASGDELDPD NSNPRKKKKR YHRHTPQQIQ  180
ELEAVFKECP HPDEKQRMEL SRRLNLESRQ VKFWFQNRRT QMKTQIERHE NALLRQENDK  240
LRAENLTIRE AMRNPMCASC GGAAVLGEVS LEEQHLRIEN ARLKDELDRV CALAGKFLGR  300
PISSISSPGP PSLQACSGLE LGVGNNGGFG LGALGASALQ SIPDLMGGSS SLTGGPVGSA  360
AMRLPAGIGG LDGAMHAAAA DGVAIDRAVL LELALAAMDE LVKVAQMDEP LWLPSLDGGF  420
ETLNYDEYHR AFARVLGQSP AGYVSEATRE SGIAIISSVD LVDSLMDAPR WSEMFPCVVA  480
RASTTDIISS GMGGTRSGSI QLMHAELQVL SPLVPIREVV FLRFCKQHAE GLWAVVDVSV  540
DAILRPDQNG SGGSLSSYMG CRLLPTGCIV QDMNNGYSKV TWVVHAEYDE TAAHQLYRPL  600
LRSGQALGAR RWLASLQRQC QYLAILCSNT LPARDHAAIT PVGRRSMLKL AQRMTDNFCA  660
GVCASAAQKW RRLDEWRGEG GSGGGGGGVG DGEDKVRMMA RHSVGAPGEP PGVVLSATTS  720
VRLPGTLPQR VFDYLRDEQR RGDWDILANG EAMQEMDHIA KGQHHGNAVS LLRPNATSGN  780
QNNMLILQET CTDSSGSLVV YAPVDVQSMH VVMNGGDSAY VSLLPSGFAI LPDGYNNGAS  840
PSPAEVGSGA SPNSAAGGGG GSNNTGSLVT VAFQILVNNL PTAKLTVESV DTVSNLLSCT  900
IQKIKSALQA SIISP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612621.10.0homeobox-leucine zipper protein ROC6
SwissprotQ7Y0V70.0ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6
TrEMBLA0A0E0M3M50.0A0A0E0M3M5_ORYPU; Uncharacterized protein
STRINGOPUNC09G15430.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein