PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC09G15300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 23612.7 Da PI: 10.895 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2e-19 | 26 | 76 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d +r r +lg+f+taeeAa+a+++a++ l+ge OPUNC09G15300.1 26 RFVGVRQRP-SGRWVAEIKD----SaQRVRLWLGTFDTAEEAARAYDEAARVLRGE 76 589******.7*********....4456*************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.35 | 26 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 26 | 89 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-28 | 26 | 83 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-14 | 26 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-8 | 27 | 38 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-20 | 27 | 83 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.55E-23 | 32 | 85 | No hit | No description |
PRINTS | PR00367 | 3.0E-8 | 49 | 65 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 222 aa Download sequence Send to blast |
MAAQESGRMA TTTGGIVAAK ARRGRRFVGV RQRPSGRWVA EIKDSAQRVR LWLGTFDTAE 60 EAARAYDEAA RVLRGEHART NFAAHGGDAA ATASPPRARL SRNLRHVMAR AAAGSRASAA 120 CVGGEQFALA AVFRRCMHPA ATQQQCAAAD TTVHVKNAVQ PSFVVPRRTE APPPPPPPTP 180 LLLTEDVLVD FDDGLGYAGV GTALRVSSSL IVPSSFRLDD DF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 26 | 82 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010239429.1 | 5e-67 | dehydration-responsive element-binding protein 1C | ||||
TrEMBL | A0A0E0M3K3 | 1e-157 | A0A0E0M3K3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC09G15300.1 | 1e-158 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12429 | 26 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 8e-13 | related to AP2 11 |