PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC09G15280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 256aa MW: 27201 Da PI: 5.583 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 5.8e-18 | 61 | 113 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ grWv+e+r+p ++g +r +lg++ tae Aa+a++aa+++l+g OPUNC09G15280.1 61 PVYRGVRRRGGAGRWVCEVRVPGKRG--ARLWLGTYVTAEAAARAHDAAMLALRG 113 68*******************95544..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-13 | 61 | 113 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-26 | 62 | 125 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.5E-18 | 62 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.535 | 62 | 123 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-16 | 62 | 124 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.8E-5 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-5 | 87 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDMAGHELNS SSPSSSSGAE SSSSSGQQQQ QHQHNNSNNT VWSSPPKRPA GRTKFRETRH 60 PVYRGVRRRG GAGRWVCEVR VPGKRGARLW LGTYVTAEAA ARAHDAAMLA LRGGGGAACL 120 NFQDSAWLLA VPPAAPSDLA DVRRAATEAV AGFLQRNKTA NSAAIAEAMD EATSAPPLLP 180 NHAGCSSETP QRSIDGTVDT AAALDMFELD FFGEMDYDMY YASLAEGLLM EPPPPAAATA 240 HWDNGDEGAD IALWSY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006859 | 0.0 | AP006859.1 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa273B05. | |||
GenBank | AP014965 | 0.0 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611305.1 | 4e-98 | dehydration-responsive element-binding protein 1H | ||||
Swissprot | A2Z388 | 2e-99 | DRE1H_ORYSI; Dehydration-responsive element-binding protein 1H | ||||
Swissprot | Q0J090 | 2e-99 | DRE1H_ORYSJ; Dehydration-responsive element-binding protein 1H | ||||
TrEMBL | A0A0E0M3K1 | 0.0 | A0A0E0M3K1_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC09G15280.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 3e-20 | C-repeat/DRE binding factor 1 |