PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC09G14150.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25851.4 Da PI: 7.9943 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68 | 9.2e-22 | 45 | 79 | 1 | 35 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaev 35 krienk+nrqvtf+kRrng+lKKA+ELSvLCdae OPUNC09G14150.3 45 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEL 79 79*******************************95 PP | |||||||
2 | K-box | 81.3 | 2.2e-27 | 78 | 159 | 12 | 93 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 + +s+++e+ kLk+++enLqr+qR+llGedL++L +keL+qLe+qL++sl++iRs++++ +l+q+ +lq++ +e ++ + + OPUNC09G14150.3 78 ELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQQMLDQLTDLQRRLEESNQLHGQ 159 457999*******************************************************************999988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.57E-20 | 37 | 80 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-25 | 37 | 93 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.203 | 37 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-20 | 39 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.0E-18 | 46 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-20 | 59 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.5E-20 | 74 | 95 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.242 | 80 | 166 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.7E-21 | 81 | 153 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MDRAVRVGLG FRVVVRFPPP CRKWQCGEEE EEEEIGMGRG RVELKRIENK INRQVTFAKR 60 RNGLLKKAYE LSVLCDAELV QSSRNEYLKL KARVENLQRT QRNLLGEDLG TLGIKELEQL 120 EKQLDSSLRH IRSTRTQQML DQLTDLQRRL EESNQLHGQV WEHGATLLGY ERQSPHAVQQ 180 VPPHGGGGNG FFHPLEAAAE PTLQIGFTPE QMNNSCVTAF MPTWLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 4e-24 | 82 | 155 | 19 | 95 | Developmental protein SEPALLATA 3 |
4ox0_B | 4e-24 | 82 | 155 | 19 | 95 | Developmental protein SEPALLATA 3 |
4ox0_C | 4e-24 | 82 | 155 | 19 | 95 | Developmental protein SEPALLATA 3 |
4ox0_D | 4e-24 | 82 | 155 | 19 | 95 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:9339904, ECO:0000269|Ref.9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072867 | 1e-107 | AK072867.1 Oryza sativa Japonica Group cDNA clone:J023143P16, full insert sequence. | |||
GenBank | FJ750936 | 1e-107 | FJ750936.1 Oryza sativa clone KCS108B10 MADS-box transcription factor 8 mRNA, complete cds. | |||
GenBank | OSU32109 | 1e-107 | U32109.1 Oryza sativa putative MADS box protein (OsMADS24) mRNA, partial cds. | |||
GenBank | OSU78892 | 1e-107 | U78892.1 Oryza sativa MADS box protein (OsMADS8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610824.1 | 1e-119 | MADS-box transcription factor 8 isoform X2 | ||||
Swissprot | Q9SAR1 | 1e-120 | MADS8_ORYSJ; MADS-box transcription factor 8 | ||||
TrEMBL | A0A0E0M346 | 1e-165 | A0A0E0M346_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC09G14150.3 | 1e-166 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3483 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 5e-41 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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