PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC09G14150.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25647.1 Da PI: 9.1521 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.9 | 2.1e-21 | 9 | 42 | 1 | 34 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 krienk+nrqvtf+kRrng+lKKA+ELSvLCdae OPUNC09G14150.2 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAE 42 79******************************97 PP | |||||||
2 | K-box | 82 | 1.4e-27 | 72 | 153 | 9 | 90 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 +e++ +s+++e+ kLk+++enLqr+qR+llGedL++L +keL+qLe+qL++sl++iRs++++ +l+q+ +lq++ek +++ OPUNC09G14150.2 72 KENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQQMLDQLTDLQRREKLEESN 153 45667899*******************************************************************9854433 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.02 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.4E-21 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.33E-21 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-17 | 10 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.0E-21 | 74 | 152 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.273 | 77 | 165 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEGWPGGVRM TRTLERYQKC 60 SYGGPDTAIQ NKENELVQSS RNEYLKLKAR VENLQRTQRN LLGEDLGTLG IKELEQLEKQ 120 LDSSLRHIRS TRTQQMLDQL TDLQRREKLE ESNQLHGQVW EHGATLLGYE RQSPHAVQQV 180 PPHGGGGNGF FHPLEAAAEP TLQIGFTPEQ MNNSCVTAFM PTWLP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 4e-27 | 62 | 154 | 1 | 95 | Developmental protein SEPALLATA 3 |
4ox0_B | 4e-27 | 62 | 154 | 1 | 95 | Developmental protein SEPALLATA 3 |
4ox0_C | 4e-27 | 62 | 154 | 1 | 95 | Developmental protein SEPALLATA 3 |
4ox0_D | 4e-27 | 62 | 154 | 1 | 95 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:9339904, ECO:0000269|Ref.9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK072867 | 1e-140 | AK072867.1 Oryza sativa Japonica Group cDNA clone:J023143P16, full insert sequence. | |||
GenBank | FJ750936 | 1e-140 | FJ750936.1 Oryza sativa clone KCS108B10 MADS-box transcription factor 8 mRNA, complete cds. | |||
GenBank | OSU32109 | 1e-140 | U32109.1 Oryza sativa putative MADS box protein (OsMADS24) mRNA, partial cds. | |||
GenBank | OSU78892 | 1e-140 | U78892.1 Oryza sativa MADS box protein (OsMADS8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610824.1 | 1e-146 | MADS-box transcription factor 8 isoform X2 | ||||
Swissprot | Q9SAR1 | 1e-147 | MADS8_ORYSJ; MADS-box transcription factor 8 | ||||
TrEMBL | A0A0E0M345 | 1e-166 | A0A0E0M345_ORYPU; Uncharacterized protein | ||||
STRING | OS09T0507200-01 | 1e-146 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G24260.3 | 5e-56 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|