PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G14150.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25647.1 Da    PI: 9.1521
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G14150.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.92.1e-21942134
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdae 34
                     krienk+nrqvtf+kRrng+lKKA+ELSvLCdae
  OPUNC09G14150.2  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAE 42
                     79******************************97 PP
2K-box821.4e-2772153990
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                      +e++  +s+++e+ kLk+++enLqr+qR+llGedL++L +keL+qLe+qL++sl++iRs++++ +l+q+ +lq++ek  +++
  OPUNC09G14150.2  72 KENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQQMLDQLTDLQRREKLEESN 153
                      45667899*******************************************************************9854433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.02142IPR002100Transcription factor, MADS-box
SMARTSM004328.4E-21154IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.33E-21162IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-19323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-171042IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-192338IPR002100Transcription factor, MADS-box
PfamPF014862.0E-2174152IPR002487Transcription factor, K-box
PROSITE profilePS5129714.27377165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEGWPGGVRM TRTLERYQKC  60
SYGGPDTAIQ NKENELVQSS RNEYLKLKAR VENLQRTQRN LLGEDLGTLG IKELEQLEKQ  120
LDSSLRHIRS TRTQQMLDQL TDLQRREKLE ESNQLHGQVW EHGATLLGYE RQSPHAVQQV  180
PPHGGGGNGF FHPLEAAAEP TLQIGFTPEQ MNNSCVTAFM PTWLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-2762154195Developmental protein SEPALLATA 3
4ox0_B4e-2762154195Developmental protein SEPALLATA 3
4ox0_C4e-2762154195Developmental protein SEPALLATA 3
4ox0_D4e-2762154195Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:9339904, ECO:0000269|Ref.9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728671e-140AK072867.1 Oryza sativa Japonica Group cDNA clone:J023143P16, full insert sequence.
GenBankFJ7509361e-140FJ750936.1 Oryza sativa clone KCS108B10 MADS-box transcription factor 8 mRNA, complete cds.
GenBankOSU321091e-140U32109.1 Oryza sativa putative MADS box protein (OsMADS24) mRNA, partial cds.
GenBankOSU788921e-140U78892.1 Oryza sativa MADS box protein (OsMADS8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610824.11e-146MADS-box transcription factor 8 isoform X2
SwissprotQ9SAR11e-147MADS8_ORYSJ; MADS-box transcription factor 8
TrEMBLA0A0E0M3451e-166A0A0E0M345_ORYPU; Uncharacterized protein
STRINGOS09T0507200-011e-146(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.35e-56MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Jang YH, et al.
    Survey of rice proteins interacting with OsFCA and OsFY proteins which are homologous to the Arabidopsis flowering time proteins, FCA and FY.
    Plant Cell Physiol., 2009. 50(8): p. 1479-92
    [PMID:19561057]
  3. Cui R, et al.
    Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa).
    Plant J., 2010. 61(5): p. 767-81
    [PMID:20003164]
  4. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]