PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC09G14150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 223aa MW: 25389.8 Da PI: 9.1592 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.9 | 2e-21 | 9 | 42 | 1 | 34 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 krienk+nrqvtf+kRrng+lKKA+ELSvLCdae OPUNC09G14150.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAE 42 79******************************97 PP | |||||||
2 | K-box | 82.5 | 9.2e-28 | 72 | 156 | 9 | 93 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 +e++ +s+++e+ kLk+++enLqr+qR+llGedL++L +keL+qLe+qL++sl++iRs++++ +l+q+ +lq++ +e ++ + + OPUNC09G14150.1 72 KENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQQMLDQLTDLQRRLEESNQLHGQ 156 45667899********************************************************************999988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.02 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.4E-21 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.19E-21 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-17 | 10 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.9E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.2E-21 | 74 | 150 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.242 | 77 | 163 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEGWPGGVRM TRTLERYQKC 60 SYGGPDTAIQ NKENELVQSS RNEYLKLKAR VENLQRTQRN LLGEDLGTLG IKELEQLEKQ 120 LDSSLRHIRS TRTQQMLDQL TDLQRRLEES NQLHGQVWEH GATLLGYERQ SPHAVQQVPP 180 HGGGGNGFFH PLEAAAEPTL QIGFTPEQMN NSCVTAFMPT WLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 2e-26 | 62 | 152 | 1 | 95 | Developmental protein SEPALLATA 3 |
4ox0_B | 2e-26 | 62 | 152 | 1 | 95 | Developmental protein SEPALLATA 3 |
4ox0_C | 2e-26 | 62 | 152 | 1 | 95 | Developmental protein SEPALLATA 3 |
4ox0_D | 2e-26 | 62 | 152 | 1 | 95 | Developmental protein SEPALLATA 3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|PubMed:9339904, ECO:0000269|Ref.9}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072867 | 1e-139 | AK072867.1 Oryza sativa Japonica Group cDNA clone:J023143P16, full insert sequence. | |||
GenBank | FJ750936 | 1e-139 | FJ750936.1 Oryza sativa clone KCS108B10 MADS-box transcription factor 8 mRNA, complete cds. | |||
GenBank | OSU32109 | 1e-139 | U32109.1 Oryza sativa putative MADS box protein (OsMADS24) mRNA, partial cds. | |||
GenBank | OSU78892 | 1e-139 | U78892.1 Oryza sativa MADS box protein (OsMADS8) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610824.1 | 1e-145 | MADS-box transcription factor 8 isoform X2 | ||||
Swissprot | Q9SAR1 | 1e-146 | MADS8_ORYSJ; MADS-box transcription factor 8 | ||||
TrEMBL | A0A0E0M344 | 1e-164 | A0A0E0M344_ORYPU; Uncharacterized protein | ||||
STRING | OS09T0507200-01 | 1e-144 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.3 | 6e-56 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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