PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G14110.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 335aa    MW: 36162.8 Da    PI: 7.4759
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G14110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP66.65.4e-212394178
                     EE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP 41 rfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                     rfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+qa
  OPUNC09G14110.1  2 RFCQQCSRFHLLGEFDEAKRSCRKRLDGHNRRRRKPQA 39
                     9**********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031109.0E-14136IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.23137IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.109.2E-11124IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-18242IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MRFCQQCSRF HLLGEFDEAK RSCRKRLDGH NRRRRKPQAD SMSSGSFMTS QQGTRFASFT  60
PPRPEPSWSG IIKSEETPYY SHHHHHHHPH PVMTSRQHFV GSPSSATTTA TAAFSPKEGR  120
RFPFLHEGDQ ISFGGSGGGG AAATLEISVC QPLLKTTVVA PPPPPPESSS SNKMFSSDGL  180
TTTTTHHHHH HHQVLDSDCA LSLLSSPSNS SSVDVSRMVQ QQQQPSPAAS GAEHHHHHHH  240
IPMAQPLVPN LQQQFGSSSP WFATCSQSTS AAAAAAAAAG GGGFTCPSME SEQQQLNAVL  300
VPSSNENEMN YHGMFHVGGE GSSDGTSPSL PFSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-132365084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11936KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1087591e-150AC108759.2 Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence.
GenBankAP0149651e-150AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696413.11e-152PREDICTED: squamosa promoter-binding-like protein 18
SwissprotQ0J0K11e-139SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLA0A0E0M3380.0A0A0E0M338_ORYPU; Uncharacterized protein
STRINGOPUNC09G14110.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-19SBP family protein