PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC09G13450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 693aa MW: 76412.3 Da PI: 4.5418 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 150.7 | 7e-47 | 11 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 ppGfrF+Ptdeelv ++Lk+++++ + + i++vd+yk++P++Lp+ ++++++k+w+fFs+ d+ky++g+r++r+t +gyWkatgkd++++ OPUNC09G13450.1 11 PPGFRFSPTDEELVLYFLKRRIATGRPTP--YIADVDVYKSHPSHLPErsALRTGDKQWFFFSRMDRKYPNGSRASRTTGEGYWKATGKDRSIC 102 8*********************9999555..6**************9435778899************************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +g +vg kktLv+++grap+ge+tdWvmhey++ OPUNC09G13450.1 103 N-GGGAVGSKKTLVYHHGRAPRGERTDWVMHEYTV 136 *.999****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-52 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.195 | 10 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-24 | 11 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 693 aa Download sequence Send to blast |
MGMENPPLRW PPGFRFSPTD EELVLYFLKR RIATGRPTPY IADVDVYKSH PSHLPERSAL 60 RTGDKQWFFF SRMDRKYPNG SRASRTTGEG YWKATGKDRS ICNGGGAVGS KKTLVYHHGR 120 APRGERTDWV MHEYTVLADA LPPAARDREV YALYKLFHKS GAGPKNGEQY GAPFREEDWL 180 DDDDDDQLPA EVAVPAPATT SGRAATMEEH ADRELQGGDL DGLLAQFGND QERIEPWSDF 240 STHVTSQVQI QHRADQGWPS DDGGKSDVAD ATTSCTALLM AENTGTELPF DGLEQFLMQI 300 SDDQQTAEMF SGFSTSIPQS QLQHDDHQDC LGVRREEVGA ADSTSISSAV VTEECTVREL 360 QDIEGLLMQI ANDQENAESL PDFSTPVHLH DCHQVAFGDV QGSQRATFGI ANLSTIVQES 420 PNFDLQTGPS NQITESILTT EPMSRETNTA EETSALRSMS GLGSSDRQGG DDEFLEINDF 480 FDPEDLEQIM GCTTIQNLIP AADGVFDNLQ YSDAPMFLPG SFDTTGLVAE NHYVEFGASG 540 IQNEGFQHTT ELWAHNQVAL SVRSHMKDNH VVFSHSSDTS SIHRVNEQPP NRSSNASQSW 600 FNAALSALLD SVPSSPAMAA ENIGLNRTLQ RISSFRSQQP AREEVSSTLM HTRRRGGGLI 660 FISLMVLLVA IVWTFINGSA VKLCKGLWKF SST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-43 | 8 | 134 | 13 | 138 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068501 | 0.0 | AK068501.1 Oryza sativa Japonica Group cDNA clone:J013155B08, full insert sequence. | |||
GenBank | AK099237 | 0.0 | AK099237.1 Oryza sativa Japonica Group cDNA clone:J013112C23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611740.1 | 0.0 | NAC domain-containing protein 17 isoform X1 | ||||
TrEMBL | A0A0E0M2V8 | 0.0 | A0A0E0M2V8_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC09G13450.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9128 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 7e-68 | NAC domain containing protein 17 |