PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC09G13250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 399aa MW: 41049.3 Da PI: 8.504 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.9 | 5.2e-42 | 79 | 155 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC +dls +k y+ rhkvC +h+k p v+v+gleqrfCqqCsrfh+l efD+ek+sCrrrLa+hnerrrk++ OPUNC09G13250.1 79 RCQVEGCGVDLSGVKPYYCRHKVCYMHAKEPIVVVAGLEQRFCQQCSRFHQLPEFDQEKKSCRRRLAGHNERRRKPT 155 6**************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-33 | 76 | 141 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.658 | 77 | 154 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.19E-40 | 78 | 157 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.5E-32 | 80 | 153 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MATGGSGGGG GGGGGGGGGG GGGGDDVHGL KFGKKIYFEQ DAAASASAAA VESSSTSSGG 60 GGKKGKGVAA APPPPPPPRC QVEGCGVDLS GVKPYYCRHK VCYMHAKEPI VVVAGLEQRF 120 CQQCSRFHQL PEFDQEKKSC RRRLAGHNER RRKPTPGPLS SRYGRLAASF HEEPGRSRSF 180 VVDFSYPRVP SSVRDAWPAI QPGDRMSGSI QWQGGHELHP HRSAVAGYGD HHAFSSHGGS 240 AAGAPMLHHP AFELTSGGCL AGVATDSSCA LSLLSTQPWD ATQSTSSHNR SPAMSSTASA 300 FGGGNNPVAP SVMASNYMAP SPGWNSSSRG HDGARNVHLP PPHGIALNEV PTGSVHHGHF 360 SGELELALQG GAPSNRPETE HGSGSGAFSH STNAMNWSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 80 | 153 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK063561 | 0.0 | AK063561.1 Oryza sativa Japonica Group cDNA clone:001-117-F03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610961.1 | 0.0 | squamosa promoter-binding-like protein 17 isoform X1 | ||||
Swissprot | A3C057 | 0.0 | SPL17_ORYSJ; Squamosa promoter-binding-like protein 17 | ||||
TrEMBL | A0A0E0M2T4 | 0.0 | A0A0E0M2T4_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC09G13250.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2527 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 2e-44 | squamosa promoter binding protein-like 9 |