PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G12260.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 432aa    MW: 45610.7 Da    PI: 6.1516
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G12260.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09261309355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  OPUNC09G12260.2 261 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 309
                      58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.98E-11256313No hitNo description
SuperFamilySSF474596.28E-17256326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.65258308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16259325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-7261309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-11264314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDMNESSEKG MDSNPSSGPG NGIPVEWQSQ FSSAFACQPS VAAQHQQHAM MDSFAAASAG  60
LWASSDVVSA MSSAAPPRGA GFLAPVPGFL QQGLGHFPVD SGFIERAARS TCFGAGAGSG  120
MIGGAAYGAA DHAMGDTFGG AAEGLMDHHR NVGNDKAEEE FAGNGHDEVP SSEVAGGDCS  180
SKGSDSKKRR RNEVMGADQV HSSNLPSDSA NESVHSKDKG EESSPATMNG GKSKGKGAKE  240
TSESQKEEYI HVRARRGQAT NSHSLAERLR REKISERMKL LQDLVPGCSK VTGKAVMLDE  300
IINYVQSLQR QVEFLSMKLA TVNPRLDLNI EGLLSKDLLR FPGVPSSSIG FSPEMMHPQL  360
QLSQPGLIHG GTAGMANPDV FRRIIQAQLG AKDGSQMPHS LNGSFSDVSQ MAYPSLGSQD  420
LSIRPSQDGF QM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1214180.0AK121418.1 Oryza sativa Japonica Group cDNA clone:J023133H05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612420.10.0transcription factor bHLH49 isoform X2
TrEMBLA0A0E0M2E10.0A0A0E0M2E1_ORYPU; Uncharacterized protein
STRINGOPUNC09G12260.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-63bHLH family protein