PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G11870.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 271aa    MW: 29079.9 Da    PI: 4.3624
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G11870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.7e-1948101356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++ eq+++Le+ Fe ++++  e++++LA+ lgL+ rqV vWFqNrRa++k
  OPUNC09G11870.1  48 KKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 101
                      456899***********************************************9 PP
2HD-ZIP_I/II132.71.4e-4247139193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrls eqv++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++yd+l+ ++++L++++++L +e+ke
  OPUNC09G11870.1  47 EKKRRLSVEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYTALRHSYDSLRLDHDALRRDKDALLAEIKE 139
                      69**************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.38E-1937105IPR009057Homeodomain-like
PROSITE profilePS5007117.29743103IPR001356Homeobox domain
SMARTSM003892.1E-1846107IPR001356Homeobox domain
PfamPF000462.9E-1648101IPR001356Homeobox domain
CDDcd000869.44E-1848104No hitNo description
Gene3DG3DSA:1.10.10.601.5E-1950110IPR009057Homeodomain-like
PRINTSPR000319.2E-67483IPR000047Helix-turn-helix motif
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
PRINTSPR000319.2E-68399IPR000047Helix-turn-helix motif
PfamPF021835.5E-17103144IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MKRPGGGGGS PSLVPMANSS DDGYGGVGME AEGDAEEEMM ACGGGGEKKR RLSVEQVRAL  60
ERSFEVENKL EPERKARLAR DLGLQPRQVA VWFQNRRARW KTKQLERDYT ALRHSYDSLR  120
LDHDALRRDK DALLAEIKEL KAKLGDEEAA ASFTSVKEEP AASDGPPAAG FGSSDSDSSA  180
VLNDVDAAGA APAADALAPE VCTFLGAPPS AGAGASAAAS HEEVFFHGNF LKVEEDETGF  240
LDDDEPCGGF FADEQPPPLS SWWTEPTEHW N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17278ERKARLA
295103RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0997100.0AK099710.1 Oryza sativa Japonica Group cDNA clone:J013077J22, full insert sequence.
GenBankAK1054840.0AK105484.1 Oryza sativa Japonica Group cDNA clone:001-127-B05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696875.11e-158PREDICTED: homeobox-leucine zipper protein HOX4 isoform X1
SwissprotQ6K4981e-154HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
SwissprotQ9XH371e-154HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBLA0A0E0M2A00.0A0A0E0M2A0_ORYPU; Uncharacterized protein
STRINGOPUNC09G11870.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-38homeobox protein 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]