PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G10660.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 375aa    MW: 39427.8 Da    PI: 7.7728
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G10660.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.81.4e-112162442856
                      HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  28 eereeLAkklgLterqVkvWFqNrRakek 56 
                      +++  LAk+l+L  rqV vWFqNrRa+ k
  OPUNC09G10660.3 216 KQKLALAKQLNLRPRQVEVWFQNRRARTK 244
                      567789*********************98 PP
2HD-ZIP_I/II911.4e-292142802592
      HD-ZIP_I/II  25 eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      e+++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  OPUNC09G10660.3 214 EQKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 280
                      7899***********************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.276157246IPR001356Homeobox domain
SMARTSM003898.4E-9159250IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.7E-15161249IPR009057Homeodomain-like
CDDcd000869.42E-11161247No hitNo description
SuperFamilySSF466894.06E-10216255IPR009057Homeodomain-like
PfamPF000465.2E-9216244IPR001356Homeobox domain
PROSITE patternPS000270221244IPR017970Homeobox, conserved site
SMARTSM003401.4E-24246289IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-10246280IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MELGLSLGEA MADAGRELVL GLGMGRREEA AAAAETGRRD HEVRRELEFG SRSSRCGGSS  60
PEPTVRLTLL PMGHLEASTR GFDVNRPPSS GGGAGAAEEE QDDVAGAALS SSPNNSAGSF  120
PMDDFSGHGL GGNDAAPGGG GGGGDRSCSR ASDEDDGGSA RKKLRLSKEQ SAFLEESFKE  180
HSTLNPVSLS SSHRSNTSSF PSPNVASRLA LCREQKQKLA LAKQLNLRPR QVEVWFQNRR  240
ARTKLKQTEV DCEYLKRCCE TLTEENRRLQ KELAELRALK TVHPFYMHLP ATTLSMCPSC  300
ERVASNSVPA TAASAAAPAT AAQPTAPSSG GIAATSAAAA APDHRPSSFA ALFSSPRRFP  360
LSVAPQAQAQ PPTSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238246RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611029.11e-178homeobox-leucine zipper protein HOX11
SwissprotQ67UE21e-179HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A0E0M1V20.0A0A0E0M1V2_ORYPU; Uncharacterized protein
STRINGOPUNC09G10660.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-63homeobox from Arabidopsis thaliana