PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G10660.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 411aa    MW: 43185.1 Da    PI: 6.7057
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G10660.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.61.6e-112522802856
                      HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  28 eereeLAkklgLterqVkvWFqNrRakek 56 
                      +++  LAk+l+L  rqV vWFqNrRa+ k
  OPUNC09G10660.2 252 KQKLALAKQLNLRPRQVEVWFQNRRARTK 280
                      567789*********************98 PP
2HD-ZIP_I/II90.81.7e-292503162592
      HD-ZIP_I/II  25 eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      e+++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  OPUNC09G10660.2 250 EQKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 316
                      7899***********************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.276193282IPR001356Homeobox domain
SMARTSM003898.4E-9195286IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.0E-15197285IPR009057Homeodomain-like
CDDcd000864.54E-11197283No hitNo description
SuperFamilySSF466894.6E-10252291IPR009057Homeodomain-like
PfamPF000465.8E-9252280IPR001356Homeobox domain
PROSITE patternPS000270257280IPR017970Homeobox, conserved site
PfamPF021831.6E-10282316IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-24282325IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MELGLSLGEA MADAGRELVL GLGMGRREEA AAAAETGRRD HEVRRELEFG SRSSRCGGSS  60
PEPTVRLTLL PMVPGLGLPW PPPPPAASES SECDGWAWAD VICVVGWQGH LEASTRGFDV  120
NRPPSSGGGA GAAEEEQDDV AGAALSSSPN NSAGSFPMDD FSGHGLGGND AAPGGGGGGG  180
DRSCSRASDE DDGGSARKKL RLSKEQSAFL EESFKEHSTL NPVSLSSSHR SNTSSFPSPN  240
VASRLALCRE QKQKLALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRCCETLTE  300
ENRRLQKELA ELRALKTVHP FYMHLPATTL SMCPSCERVA SNSVPATAAS AAAPATAAQP  360
TAPSSGGIAA TSAAAAAPDH RPSSFAALFS SPRRFPLSVA PQAQAQPPTS S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1274282RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611029.11e-177homeobox-leucine zipper protein HOX11
SwissprotQ67UE21e-178HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A0E0M1V10.0A0A0E0M1V1_ORYPU; Uncharacterized protein
STRINGOPUNC09G10660.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-62homeobox from Arabidopsis thaliana