PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G09680.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 431aa    MW: 45925.3 Da    PI: 6.7879
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G09680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32.1e-1463111148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W +eEd  l+ +v  +G+g +W + ++++g++R++k+c++rw++yl
  OPUNC09G09680.1  63 KGPWAPEEDAALKAYVDAHGTGgNWIALPHKIGLNRCGKSCRLRWLNYL 111
                      79*********************************************97 PP
2Myb_DNA-binding41.23.9e-13118160246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd l+  +    G++ W+tIa+ ++ gRt++++k++w++
  OPUNC09G09680.1 118 GGFTEEEDRLICSLYIAIGSR-WATIAAQLP-GRTDNDIKNYWNS 160
                      569******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-8540IPR009057Homeodomain-like
PROSITE profilePS500906.562954IPR017877Myb-like domain
SMARTSM00717821352IPR001005SANT/Myb domain
PROSITE profilePS5129413.75758111IPR017930Myb domain
SuperFamilySSF466895.13E-2661158IPR009057Homeodomain-like
SMARTSM007178.1E-1162113IPR001005SANT/Myb domain
PfamPF002494.0E-1363111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2364118IPR009057Homeodomain-like
CDDcd001671.60E-765111No hitNo description
PROSITE profilePS5129421.023112166IPR017930Myb domain
SMARTSM007171.6E-11116164IPR001005SANT/Myb domain
PfamPF002492.2E-11118160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-22119166IPR009057Homeodomain-like
CDDcd001671.83E-8120162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MGRAPCCDKA TVKKGPWAPE EDAALKAYVD AHGTGGNWIA LPHKIVHAEM GRAPCCDKAT  60
VKKGPWAPEE DAALKAYVDA HGTGGNWIAL PHKIGLNRCG KSCRLRWLNY LRPNIRHGGF  120
TEEEDRLICS LYIAIGSRWA TIAAQLPGRT DNDIKNYWNS KLKRRLLGGG RRPRGAPPRL  180
VLAGPGPAVA AAAAATSHNA MAASAIERMQ LSVRLRRLET PAPPPQLFTF YGGNLAAPPW  240
TLSQHPISPA ASGSSEMPRR LHHHHHPSGA AATSSYSGLI SSWSSHSHMH DAWLDTSSTP  300
PMSTSMGGDT TTTTTTMTAG GDSSSSTPTV STATTPFVGG GSIDMEDEID MLLQQIRCFD  360
ENNDDDDDDQ RLIVGDGAAA GAEHYLRALI DEAAAGANGG DVGVGSWSSC STPGVDSVFH  420
EYAQLDYVQY N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-26141666159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-26141666159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056860.0AP005686.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0016E03.
GenBankAP0057470.0AP005747.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0039E17.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610955.10.0transcription factor MYB36
SwissprotQ9FKL21e-77MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A0E0M1I80.0A0A0E0M1I8_ORYPU; Uncharacterized protein
STRINGOPUNC09G09680.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132652632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-71myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]