PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G08600.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 294aa    MW: 31581.1 Da    PI: 6.8369
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G08600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1501.1e-46231641128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL...pk.....kvkaeekew.yfFskrdkkyatgkrknratksgyWka 85 
                      lppGfrF+Ptd elv +yL++k+++  +++ ++i++vd+y++ePwdL   p+      +++ee+++ yfF++r+ + ++g+r+nrat++gyWk+
  OPUNC09G08600.1  23 LPPGFRFRPTDGELVAHYLARKAADAGFTC-TAIRDVDLYRAEPWDLlppPReaaadGAEEEEERCgYFFCTRSFRWPSGTRTNRATAAGYWKS 115
                      79**************************99.88**************75323565542223333448*************************** PP

              NAM  86 tgkdkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      tgkdk+vl++      +g+ vg+kktLvfy+grap+gekt+Wvmheyrl
  OPUNC09G08600.1 116 TGKDKAVLHHggggggGGRPVGVKKTLVFYRGRAPRGEKTSWVMHEYRL 164
                      *********98888877788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-5215199IPR003441NAC domain
PROSITE profilePS5100550.94223199IPR003441NAC domain
PfamPF023653.6E-2724164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAGGGGGGSD RASSSTAMIS RLLPPGFRFR PTDGELVAHY LARKAADAGF TCTAIRDVDL  60
YRAEPWDLLP PPREAAADGA EEEEERCGYF FCTRSFRWPS GTRTNRATAA GYWKSTGKDK  120
AVLHHGGGGG GGGRPVGVKK TLVFYRGRAP RGEKTSWVMH EYRLLHGGGG AAATASSSPT  180
TTLAGVAHSE WVICRVFVRK TPNGNNDRGT EHHLPSDNTH LRSSPAPANS FDGAGHASCS  240
FFSSANESMA PSDHFNIGDD MILHGHEEEL LMTNCSSAFY LPELLDYESF LLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-4282012170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126171e-133CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611185.11e-162NAC domain-containing protein 79
SwissprotQ9FLR38e-53NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A0E0M1440.0A0A0E0M144_ORYPU; Uncharacterized protein
STRINGOPUNC09G08600.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP153521618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.13e-51NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]