PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G07160.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 329aa    MW: 35082 Da    PI: 4.943
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G07160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.4e-1984137456
                      -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      ++++t+eq+++Le+ Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  OPUNC09G07160.1  84 KRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 137
                      4579*************98**********************************9 PP

2HD-ZIP_I/II121.93.1e-3983173291
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE d+++L++a+d+l + +++L +++e+Lr+++
  OPUNC09G07160.1  83 RKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRAALAADNESLRSQV 173
                      8*****************9999******************************************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.37878139IPR001356Homeobox domain
SuperFamilySSF466896.5E-1780141IPR009057Homeodomain-like
SMARTSM003891.8E-1681143IPR001356Homeobox domain
CDDcd000865.05E-1683140No hitNo description
PfamPF000462.1E-1684137IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-1988138IPR009057Homeodomain-like
PRINTSPR000313.6E-6110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000313.6E-6119135IPR000047Helix-turn-helix motif
PfamPF021837.7E-11139181IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MCSMNSGRLV FSSAGAGGGQ MLLFGGHGGF VGGSPVVEDG GRWRRKRPFL TTHEELELQM  60
EDLVDELYGL DETGSTAAAA AARKRRLTAE QVRALERSFE EEKRKLEPER KSELARRLGI  120
APRQVAVWFQ NRRARWKTKQ LELDFDRLRA AHDELLAGRA ALAADNESLR SQVILLTKKL  180
QANGKSPSPS PPAEQTAVPA TVHATTVTAA ESAMLFQLEE GRRCYDAAGC TTTTTTNGGV  240
GVAMPPAPAT RVAAAAAARA DNDSPESYFA GARSPPSSSE DDCGGGGGSD DDPSSSVLLP  300
DAALAGDSFE HAVAADEEAP LNSWEWLWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378951e-160CT837895.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112M06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610704.11e-148homeobox-leucine zipper protein HOX25
SwissprotA3BYC11e-139HOX25_ORYSJ; Homeobox-leucine zipper protein HOX25
TrEMBLA0A0E0M0N70.0A0A0E0M0N7_ORYPU; Uncharacterized protein
STRINGOPUNC09G07160.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127562735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-29homeobox 1