PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC09G06680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 287aa MW: 30480.9 Da PI: 6.671 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.4e-21 | 104 | 153 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g OPUNC09G06680.1 104 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 153 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.31E-30 | 103 | 163 | No hit | No description |
SuperFamily | SSF54171 | 4.71E-23 | 104 | 163 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.6E-33 | 104 | 163 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-35 | 104 | 167 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.354 | 104 | 161 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.0E-15 | 105 | 153 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 105 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 127 | 143 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MAAAIDLSGE ELMRALEPFI RDASGSPPVC SQFSPTSPFS FPHAAAFAYG GGPAQPEFSP 60 AQIHYIQARL HLQRQAAQSS PLGPRAQPMK ASAAAATPPR PQKLYRGVRQ RHWGKWVAEI 120 RLPRNRTRLW LGTFDTAEEA ALAYDQAAYR LRGDAARLNF PDNAASRGPL HASVDAKLQT 180 LCQNIAAAKN AKKSTATASA SATATSSAPT SNCSSPSSDD ASSCLESADS SPSLSPSSAA 240 TTAETPATVP EMQQLDFSEA PWDEVAAFAL TKYPSYEIDW DSLLAAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-20 | 103 | 161 | 4 | 63 | ATERF1 |
3gcc_A | 3e-20 | 103 | 161 | 4 | 63 | ATERF1 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012617 | 0.0 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612138.1 | 1e-150 | ethylene-responsive transcription factor RAP2-13 | ||||
TrEMBL | A0A0E0M0I0 | 0.0 | A0A0E0M0I0_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC09G06680.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 5e-35 | ERF family protein |