PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G03770.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 469aa    MW: 50095.6 Da    PI: 6.0862
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G03770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM69.49.5e-22171508126
              NAM   8 hPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgk 88 
                      hPt++el+  yL++++  +        +++ +i+++d y ++P dL +     +++ +++ wyfFs+ ++++++g+r+ ra++  +g W++   
  OPUNC09G03770.1  17 HPTEQELIASYLHPRLLLTAtnpaaaATAAGFIHHADAYAADPADLTArhlpaRAADGSRAWYFFSPVRTTTERGTRRARAVEsgDGCWHSESG 110
                      9*************987666556655444457**************84466666666888********************87744788****** PP

              NAM  89 dkevlskkgelvglkktLvfykgrapkge..ktdWvmhey 126
                       ++v+++ g+ vg ++ + f k+r+++g+  +t W+m e 
  OPUNC09G03770.1 111 VRAVVDAAGRRVGHRQFFSFVKKREEDGKrvRTGWLMVEL 150
                      *********************99999887558*****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.85910174IPR003441NAC domain
PfamPF023655.4E-1217150IPR003441NAC domain
SuperFamilySSF1019411.57E-3117174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MADAAADACP AVFASRHPTE QELIASYLHP RLLLTATNPA AAATAAGFIH HADAYAADPA  60
DLTARHLPAR AADGSRAWYF FSPVRTTTER GTRRARAVES GDGCWHSESG VRAVVDAAGR  120
RVGHRQFFSF VKKREEDGKR VRTGWLMVEL GLDNDASNPA SSSNELVLCK IYMTPRMPPP  180
SPPSAVTTSS TMELMPRMLP PSPPTTTMEM MPGGHKRKIP DEIAPAATTT TSSAPQQQRR  240
QRYVPDNDGS KESSGESSVV ILDDDDDDDD DDGCVRSKLS SDDGVMLPDA REDEQHAGTS  300
DSIAGNPGGF VTGGHGKLLP DLNVVATVAP DHEDEEGRRA RDAPRPQDGG TSTTTTMVAA  360
AGERGSTTGG YLPAATGYRR TLMLFLEEDA AAAAVEDEQQ QPPATRTEAN LQLRQPPCCT  420
FVVHPCTAHA KMRHGAAYGC GCRVTGSVRR GGYHLPTRVH TTTTNITGQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067410.0AK106741.1 Oryza sativa Japonica Group cDNA clone:002-115-B04, full insert sequence.
GenBankAP0058390.0AP005839.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0044K01.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611524.10.0PH domain leucine-rich repeat protein phosphatase 1
TrEMBLA0A0E0LZF40.0A0A0E0LZF4_ORYPU; Uncharacterized protein
STRINGOPUNC09G03770.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1745799