PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC09G02380.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 295aa MW: 33713.5 Da PI: 6.3479

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC09G02380.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63.5	6e-20	77	166	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 ++Yn+YAk+ GF +++s+ +ks+ ++ +++f C+ e +++++ + + +r+ ++ +tgCka+++v k+ d+kw+vt +eleHnH+ OPUNC09G02380.1 77 NYYNRYAKSWGFGTKVSSCSKSHITNDYNRYEFACYSERTSKRSGVQksaGSGSRKCNSLCKTGCKARMVVVKR-DDKWVVTIVELEHNHP 166 69********************************99998887666455677888999*********99.9************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-18	77	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MNSHSGSANR VMDDVSNEED NGLRATLIDA TLEGPGFESN TGGPGFETEC GDTKRVQSQP 60 AEPFVGMEFF SKDEAQNYYN RYAKSWGFGT KVSSCSKSHI TNDYNRYEFA CYSERTSKRS 120 GVQKSAGSGS RKCNSLCKTG CKARMVVVKR DDKWVVTIVE LEHNHPPLSP SSLRFLTSHR 180 KISDEDYELI ELLHNNNIPT RRMIKKGFDD DMKSSVDNSL NHEEFVASWT AMLDTHELQG 240 NTYLQHLYDN REKWVPCYFM DFFFPFMSTT QRSESMNNLF KDFVHPADSI RNFIA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639432.1	2e-53	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0E0LYY5	0.0	A0A0E0LYY5_ORYPU; Uncharacterized protein
STRING	OPUNC09G02380.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2639	10	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	4e-14	FAR1 family protein