PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G00260.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 774aa    MW: 89084.6 Da    PI: 7.0909
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G00260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.42.1e-22158246290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       Yn+YAk+vGFs+++++s+ks ++ge  k  fvC+k g  e++ ++   k+r+++ + +  Cka+++vk++  ++wev+++++eH+H+l+
  OPUNC09G00260.1 158 HYNRYAKRVGFSIKINTSRKSAKDGERDKVMFVCNKCGPGERTGEAcPPKKRKRSRTRQAACKARMTVKRK-GARWEVIQFVEEHTHPLV 246
                      6*************************************99999988445555666666789*********9.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-20158246IPR004330FAR1 DNA binding domain
PfamPF105511.2E-23368453IPR018289MULE transposase domain
PROSITE profilePS509668.11620656IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MDFDLNSIPE LVSGENEPPV HHFLVDDEDI SETYFPINPT DTSMEIPAIN LDDTFDFETM  60
YTAGDAGSLQ AHNVTNDEMQ VFDANDEMQV FEANDEMQKP MMICKYLKKY TMHTSVATGA  120
TTAIANTISI SAITGLSVQQ QVPYLTFSFN SEEEARAHYN RYAKRVGFSI KINTSRKSAK  180
DGERDKVMFV CNKCGPGERT GEACPPKKRK RSRTRQAACK ARMTVKRKGA RWEVIQFVEE  240
HTHPLVRKFS LKKFLRSHRA ILKEEKDFIT MLHGVNLSAG RIMQLMSELY GGPRNVPYTR  300
KDISNFKSKL GSEYRCRDIP QTIAHFEEIK KDDPNFFYKI QLDKEDRVQN IFWVDGAARN  360
TYKDFKNCIS FDCTYMTNMY NMPCAPFIGI NRHGQSIQLG CGFLRNEKTE TFAMEGVEPT  420
NIITDQDLAM KAAIALVFPH AKHRNCRWHI MQNAQKKIGH ILDHDKALCD AFNDCLDNSW  480
TEQEFDAKWD AMLETYHLED NEHFRHLWDM RHEGFNAVLK RYVNPQNSIY NFFLQYKKIQ  540
EKITVATDQN EFEAEETIPS IWGNYPMETK VLEIYTRPIF NRFQKELIAS TSYKLTRTSE  600
NMYLVESNGG PIRNYGSKAF IVAGNVLDRI YICECCKFER DGILCCHVLK VMTSDFVGQV  660
SDIPEHYILP RWMMVKEPEL PPVTSIGEQM QLPPESLKLI RYTNLCTKFT QIAKDASSNE  720
KAYRMALQHM SSMTDDIAAM KQSRKKQKKA QPAPADPATG ILDIPSASTN LQYR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211KKRKRS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056340.0AP005634.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0584D02.
GenBankAP0059090.0AP005909.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0006G10.
GenBankAP0149650.0AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0LY810.0A0A0E0LY81_ORYPU; Uncharacterized protein
STRINGOPUNC09G00260.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-90FAR1-related sequence 5