PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC09G00070.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 317aa    MW: 35324.9 Da    PI: 10.5567
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC09G00070.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57337.66.2e-12104199297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisf.kvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                      +f+r ws  De+ +L ++ + ++ t+  +  d+++++  + +s++  ++    l +Ki +LK+ + + +  ++   + + + ++ ++ f+l+ k
  OPUNC09G00070.1 104 AFERSWSRADELRILEAMAKHAN-TNRGALPDTSDLFAALASSLDRrDADLPKLADKIHKLKRWYDNARLLRRCPTDDDDDDDDARQLFQLCGK 196
                      699*****************955.4457899**********99975278899***************9988777888888899999******** PP

           DUF573  95 iWg 97 
                      +Wg
  OPUNC09G00070.1 197 VWG 199
                      **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.4E-16105199IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSSWWSWRSL FSSLGNGGGS NADASSSHPA PEAQQAAAAG AARRRSARTK KPREGPAEGE  60
AEPSQPPPKT KAQLQLGDGE PKKKPAPSPT PTQKRNNKRK RVAAFERSWS RADELRILEA  120
MAKHANTNRG ALPDTSDLFA ALASSLDRRD ADLPKLADKI HKLKRWYDNA RLLRRCPTDD  180
DDDDDDARQL FQLCGKVWGA PSTVLRRSQR QHHKAAAAHQ GNVANLTDHV SQQAALKVKE  240
NKVKNRGPYV RRELAELSVL YPTLAELIRT AFQFIGDDEA RHLDARYRKM LMDKLNMKME  300
HADITRSLLC TLAGFIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
181100KKKPAPSPTPTQKRNNKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060585e-94AP006058.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0066B16.
GenBankAP0060615e-94AP006061.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0414D03.
GenBankAP0149655e-94AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611454.11e-120uncharacterized protein LOC9269165
TrEMBLA0A0E0LY560.0A0A0E0LY56_ORYPU; Uncharacterized protein
STRINGOPUNC09G00070.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162861010