PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G19980.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 551aa    MW: 60099.8 Da    PI: 9.4893
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G19980.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.4e-20360410155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++aa+ +++g
  OPUNC08G19980.3 360 PRYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFNTAEDAARAYDAAAVRFKG 410
                      68********.**********64....55**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF102501.5E-1988205IPR019378GDP-fucose protein O-fucosyltransferase
CDDcd000181.00E-17360419No hitNo description
PfamPF008471.1E-12360409IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-22361420IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-32361419IPR001471AP2/ERF domain
SMARTSM003805.7E-35361424IPR001471AP2/ERF domain
PROSITE profilePS5103224.948361418IPR001471AP2/ERF domain
PRINTSPR003672.3E-11362373IPR001471AP2/ERF domain
PRINTSPR003672.3E-11384400IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MSSAAAAAWW ARSRIRILLP VIFLAPALFF LLSPPSSPPF FFTLPTSREE SPSASGSRVI  60
WAQRRVVEWR PCGWWRAAMP APARRNGYIR IDCYGGLNQL RRDLCDGIAV ARLLNATMVL  120
PKFEVAAYWN ESSGFADVFN VDYFIEQTRG YVEVVKDMPE EIASKEPYRV DCSKRKGHFD  180
YVETVLPALL EHQYISLTPA MSQRRDSAIE AARGEDRKAL TAIKGTRVDR LPEASDTGHH  240
RGRHKRARAS TPPRHDDDPP PPPSPVVTGG EHGGGGGEWR ATVLAEDVES AAIVAALTHV  300
ISSTAAEVTT AFPPVTIAPP QRAATATMFG QQVMQQPRGF PPLPSSSGSV ATPPEQQPRP  360
RYRGVRQRPW GKWAAEIRDP VKAARVWLGT FNTAEDAARA YDAAAVRFKG SKAKVNFPDE  420
VAGASIAAVQ PPRHHQHHAA TSLPPPRLPL PPPPHLRPRF SLAGQSTTAA PAAAAVAPPR  480
EEFPDLSRYA HILQSGDLEY DFHAAVSAGL TSTGQSSSSS SSMPPAPPSE DRRHEDSEYA  540
KKPPFEYGPS N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21362421666ATERF1
3gcc_A1e-21362421666ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3418270.0AY341827.1 Oryza sativa (japonica cultivar-group) AP2 domain-containing protein AP29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660332.10.0PREDICTED: uncharacterized protein LOC102713488
TrEMBLA0A0E0LXE40.0A0A0E0LXE4_ORYPU; Uncharacterized protein
STRINGOPUNC08G19980.30.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP736466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.16e-25related to AP2 6