PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC08G19670.6
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 136aa    MW: 14825 Da    PI: 5.3604
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC08G19670.6genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.83.3e-1443761851
                     HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      g++KK +ELSvLCd+ev +++f + g lye++s
  OPUNC08G19670.6 43 RGMFKKVYELSVLCDTEVGLVVFFPAGSLYEFAS 76
                     59******************************86 PP
2K-box16.53.6e-07851144271
            K-box  42 dLesLslkeLqqLeqqLekslkkiRskKne 71 
                      ++++L++ eL+ Le+++ ++l+ +++k + 
  OPUNC08G19670.6  85 NVNELNIAELRGLEEAMTNALTVVKNKLMM 114
                      5799********************988654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.1852778IPR002100Transcription factor, MADS-box
SMARTSM004327.4E-172777IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-152982IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-114055IPR002100Transcription factor, MADS-box
PfamPF003191.1E-114374IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-115576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0010093Biological Processspecification of floral organ identity
GO:0048481Biological Processplant ovule development
GO:0048833Biological Processspecification of floral organ number
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MEEEVRTPPA AATVAAEGGG GGGKKNRKRG KVELRRIEDR TSRGMFKKVY ELSVLCDTEV  60
GLVVFFPAGS LYEFASSTSS VLESNVNELN IAELRGLEEA MTNALTVVKN KLMMKVAGVL  120
PQSEKKSCWI SEPDQE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00605ChIP-seqTransfer from AT1G24260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2429806e-67AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence.
GenBankDQ5123676e-67DQ512367.1 Triticum aestivum MADS-box transcription factor TaAGL12 (AGL12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649438.12e-44MADS-box transcription factor 51-like isoform X2
SwissprotQ9XJ619e-17MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A0E0LXA02e-93A0A0E0LXA0_ORYPU; Uncharacterized protein
STRINGONIVA08G24570.15e-45(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.12e-14AGAMOUS-like 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]