PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC08G19670.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 173aa MW: 19763.8 Da PI: 7.9484 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96 | 1.6e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdae+a+++fs+ g+lye++s OPUNC08G19670.4 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALVVFSPAGRLYEFAS 59 79***********************************************86 PP | |||||||
2 | K-box | 17.8 | 1.4e-07 | 96 | 151 | 16 | 71 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 q+e++ L + + ++ + +l ++++L++ eL+ Le+++ ++l+ +++k + OPUNC08G19670.4 96 LRQKEHSVLDDPVPKINHITQCVLESNVNELNIAELRGLEEAMTNALTVVKNKLMM 151 5567777777777777776677777889**********************988654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.927 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-31 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.87E-40 | 2 | 71 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.8E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0048833 | Biological Process | specification of floral organ number | ||||
GO:0071486 | Biological Process | cellular response to high light intensity | ||||
GO:0071492 | Biological Process | cellular response to UV-A | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALVVFSP AGRLYEFASS 60 TSSIDKIFGR YWDLMHTTID LNIEARDYRV DCNIQLRQKE HSVLDDPVPK INHITQCVLE 120 SNVNELNIAE LRGLEEAMTN ALTVVKNKLM MKVAGVLPQS EKKSCWISEP DQE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 3e-21 | 1 | 73 | 1 | 71 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 3e-21 | 1 | 73 | 1 | 71 | Myocyte-specific enhancer factor 2B |
1tqe_R | 3e-21 | 1 | 73 | 1 | 71 | Myocyte-specific enhancer factor 2B |
1tqe_S | 3e-21 | 1 | 73 | 1 | 71 | Myocyte-specific enhancer factor 2B |
6c9l_A | 3e-21 | 1 | 73 | 1 | 71 | Myocyte-specific enhancer factor 2B |
6c9l_B | 3e-21 | 1 | 73 | 1 | 71 | Myocyte-specific enhancer factor 2B |
6c9l_C | 3e-21 | 1 | 73 | 1 | 71 | Myocyte-specific enhancer factor 2B |
6c9l_D | 3e-21 | 1 | 73 | 1 | 71 | Myocyte-specific enhancer factor 2B |
6c9l_E | 3e-21 | 1 | 73 | 1 | 71 | Myocyte-specific enhancer factor 2B |
6c9l_F | 3e-21 | 1 | 73 | 1 | 71 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00605 | ChIP-seq | Transfer from AT1G24260 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242980 | 0.0 | AK242980.1 Oryza sativa Japonica Group cDNA, clone: J090094F15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649438.1 | 1e-100 | MADS-box transcription factor 51-like isoform X2 | ||||
TrEMBL | A0A0E0LX98 | 1e-126 | A0A0E0LX98_ORYPU; Uncharacterized protein | ||||
STRING | ORGLA08G0229900.1 | 1e-100 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 4e-41 | MIKC_MADS family protein |