PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC08G19660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 385aa MW: 40659.3 Da PI: 6.9769 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 114 | 8.4e-36 | 63 | 129 | 12 | 78 |
TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 12 seakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 ++++yhrrhkvCe+hsk+p v+vsg+e rfCqqCsrfh l efDe+krsCr+rL++hn+rrrk+q+ OPUNC08G19660.1 63 DKCRDYHRRHKVCEAHSKTPLVVVSGREMRFCQQCSRFHLLAEFDEAKRSCRKRLDGHNRRRRKPQP 129 379*************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 28.12 | 49 | 127 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.8E-27 | 63 | 114 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.53E-33 | 63 | 132 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-26 | 64 | 126 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MEWDLKMPPA SWELADELEN SGGGGVPPAA AVAASSAAVG GVNVGGGGRQ ECSVDLKLGG 60 LGDKCRDYHR RHKVCEAHSK TPLVVVSGRE MRFCQQCSRF HLLAEFDEAK RSCRKRLDGH 120 NRRRRKPQPD PMNSASYLAS QQGARFSPFS TPRPEASWTG MIKTEESPYY THHQIPLAMS 180 RRQQHFVGST SDGGRRFPFL QEGEISFGTG TGGVPMDQAA AAASVCQPLL KTVAPPPPHD 240 SGGSGSGSKM FSDGGLTQVL DSDCALSLLS APANSSAIDV GGGRMVVQPT EHIPIAQPLI 300 SGLQFGGGSS SSSSAWFTAR PHHQPATGAA VVVSTAGFSC PVVESEQLNT VLTSNDNEMN 360 YNGMFHVGGE GSSDGTSSSL PFSWQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-24 | 52 | 126 | 16 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 126 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109469 | 0.0 | AK109469.1 Oryza sativa Japonica Group cDNA clone:001-128-D02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649377.1 | 0.0 | squamosa promoter-binding-like protein 16 | ||||
Swissprot | Q6YZE8 | 0.0 | SPL16_ORYSJ; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A0E0LX94 | 0.0 | A0A0E0LX94_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G19660.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1755 | 37 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-35 | SBP family protein |