PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC08G18940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 20570.7 Da PI: 9.1349 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.7 | 1.9e-15 | 12 | 61 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 g +GVr++ +grW+AeIr+p+ r+r ++g+f ++ Aa a++aa +++g OPUNC08G18940.1 12 GLRGVRRRL-WGRWAAEIRVPRG---RARLWIGTFPSPTTAALAYDAALYCFHG 61 579***877.**********943...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 20.613 | 12 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-15 | 13 | 65 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.3E-6 | 13 | 24 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-10 | 13 | 61 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-21 | 14 | 73 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-18 | 14 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.20E-12 | 14 | 75 | No hit | No description |
PRINTS | PR00367 | 2.3E-6 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MVPPAHAPKN LGLRGVRRRL WGRWAAEIRV PRGRARLWIG TFPSPTTAAL AYDAALYCFH 60 GGAPPGNRAF NFPYAPRLRI DDRRRHALTL GHVRAIAERY AHDVGSVLFR PLPPALPIAA 120 PVPVFAVAAT PMVAAPAPAV ANHAAAAATD PYYCNEPDTT TDEDVMAAAD RLLSMDIEEV 180 AALIAIVQQG E |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108208 | 1e-130 | AK108208.1 Oryza sativa Japonica Group cDNA clone:002-140-D07, full insert sequence. | |||
GenBank | AP003865 | 1e-130 | AP003865.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1081_B12. | |||
GenBank | AP005509 | 1e-130 | AP005509.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1003_A09. | |||
GenBank | AP014964 | 1e-130 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 1e-130 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015649451.1 | 7e-82 | ethylene-responsive transcription factor ERF015 | ||||
TrEMBL | A0A0E0LX03 | 1e-132 | A0A0E0LX03_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G18940.1 | 1e-133 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 |