PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC08G18660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 163aa MW: 18367.7 Da PI: 5.6264 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.3 | 9e-37 | 20 | 119 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaC++lrr+Ca+dCvlap fpa++p+++a+vh++FGasnv +ll++lp er++a++++++eA ++++dPvyG++++i++lq++++ ++ el OPUNC08G18660.1 20 RCAACRYLRRRCADDCVLAPFFPASRPHRYACVHRVFGASNVARLLQSLPMAERSNAANTMAMEAYWKVQDPVYGCTRIINRLQEEIRAVQCEL 113 6********************************************************************************************* PP DUF260 95 allkee 100 a+++++ OPUNC08G18660.1 114 ARTQAH 119 *99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.726 | 19 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-36 | 20 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MQDPEEDDDD QQQQHPTARR CAACRYLRRR CADDCVLAPF FPASRPHRYA CVHRVFGASN 60 VARLLQSLPM AERSNAANTM AMEAYWKVQD PVYGCTRIIN RLQEEIRAVQ CELARTQAHL 120 AVVVASSQQP PPPPPPPPQQ QQEEQSPPPL LDPANEFLNL DGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-28 | 21 | 115 | 12 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-28 | 21 | 115 | 12 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK112071 | 3e-94 | AK112071.1 Oryza sativa Japonica Group cDNA clone:001-120-E04, full insert sequence. | |||
GenBank | AP004708 | 3e-94 | AP004708.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0700D12. | |||
GenBank | AP004761 | 3e-94 | AP004761.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0686C03. | |||
GenBank | AP014964 | 3e-94 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 3e-94 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006660281.1 | 1e-63 | PREDICTED: LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 6e-37 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A0E0LWW7 | 1e-114 | A0A0E0LWW7_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G18660.1 | 1e-115 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5282 | 35 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26620.1 | 3e-28 | LOB domain-containing protein 23 |