PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC08G18140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SBP | ||||||||
Protein Properties | Length: 417aa MW: 42702.2 Da PI: 9.1242 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.3 | 3.8e-42 | 102 | 179 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC adls +k+y+ rhkvC +hskap v+v+gleqrfCqqCsrfh l efD++krsCrrrLa+hnerrr++q+ OPUNC08G18140.1 102 RCQVEGCGADLSGIKNYYCRHKVCFMHSKAPRVVVAGLEQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRRPQT 179 6**************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.0E-35 | 99 | 164 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.47 | 100 | 177 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.49E-40 | 101 | 180 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.9E-32 | 103 | 176 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MEMASGGAAA GGVGGGGGGG GDEHRQLHGL KFGKKIYFED ATTAASGGTG TGTGTGTGSA 60 SAAPTSSSKA AAAGGGGRGG VGKNKGKGVA APAPAPPPPP PRCQVEGCGA DLSGIKNYYC 120 RHKVCFMHSK APRVVVAGLE QRFCQQCSRF HLLPEFDQGK RSCRRRLAGH NERRRRPQTP 180 LASRYGRLAA SVGEEQRRFR SFTLDFSYPR VPSSVRNAWP AIQPGDRISG GIQWHGNLAP 240 HAHTSAVAGY GTHAYSGQGS SASGPPVFPG PNLPPGGCLA GVGATTDSSC ALSLLSTQPW 300 DTTTHSATTS HNQAAAMSTT TSFDGNPVAP SAMAGSYMAP SPWTGSRGHE GGGQSVAHQL 360 PHEVSLDEVH PGPSHHAHFS GELELALQGN GPAPAPRIDP GSSSTFDQTS NTMDWSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-29 | 103 | 176 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107191 | 0.0 | AK107191.1 Oryza sativa Japonica Group cDNA clone:002-125-A04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650813.1 | 0.0 | squamosa promoter-binding-like protein 14 isoform X1 | ||||
Swissprot | Q7EXZ2 | 0.0 | SPL14_ORYSJ; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A0E0LWR0 | 0.0 | A0A0E0LWR0_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G18140.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2527 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 2e-42 | squamosa promoter binding protein-like 9 |