PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC08G16830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 267aa MW: 28014.1 Da PI: 6.5079 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.5 | 1.2e-37 | 53 | 111 | 4 | 62 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +cprC+s++tkfCyynny++sqPr+fCk CrryWtkGG+lrnvPvGgg+rk+ +ss OPUNC08G16830.1 53 EGDPCPRCESRDTKFCYYNNYNTSQPRHFCKCCRRYWTKGGTLRNVPVGGGTRKKSSSS 111 5678**************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-26 | 54 | 106 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.286 | 55 | 109 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.3E-31 | 56 | 109 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 57 | 93 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 267 aa Download sequence Send to blast |
MQEQQPEPGR RPVQQFATVD LRRPKGYAAA PATPQPAAAA AAAAPAATAA AGEGDPCPRC 60 ESRDTKFCYY NNYNTSQPRH FCKCCRRYWT KGGTLRNVPV GGGTRKKSSS SSSSSSSSSA 120 AAAAAASKRQ KTSKKRCVTP PEPAAAATPV LTEATADSAA KTTTEATTEK KTTTTTTPPA 180 PETTSEITTE LVVPAVEEDS FTDLLQPDSA AVTLGLDFSD YPSITKSLAD PDLHFEWPAA 240 AFDMASYWPA GAGFADPDPT AVFLNLP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00672 | SELEX | Transfer from GRMZM2G009406 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK241364 | 0.0 | AK241364.1 Oryza sativa Japonica Group cDNA, clone: J065152E11, full insert sequence. | |||
GenBank | AP004620 | 0.0 | AP004620.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0605H02. | |||
GenBank | AP014964 | 0.0 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015650493.1 | 1e-140 | dof zinc finger protein MNB1A | ||||
Swissprot | P38564 | 2e-71 | MNB1A_MAIZE; Dof zinc finger protein MNB1A | ||||
TrEMBL | A0A0E0LW91 | 0.0 | A0A0E0LW91_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC08G16830.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51700.1 | 2e-28 | DOF zinc finger protein 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|